myRT

myRT report for GCA_002107495.1_ASM210749v1

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Seq: NBRY01000023.1 Salmonella enterica subsp. enterica serovar Litchfield strain NY_FSL S10-955 NODE_23_length_61355_cov_12.8613_ID_3175, whole genome shotgun sequence (61355 bp)
Overview 1 RT 1: 1820-9037 bp Neighborhood of RT #1 [1820, 9060] DUF5375 Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 HTH_Tnp_1 CsgD Feature: gene Location: 1820-2140 bp Feature: domain Description: DUF5375 Location: 1823-2138 bp Feature: domain Description: DUF5375 Location: 1 823-21 38 bp Feature: gene Location: 2155-4488 bp Feature: domain Description: Prim_Zn_Ribbon Location: 2245-2353 bp Feature: domain Description: Prim_Zn_Ribbon Location: 2245-2353 bp Feature: domain Description: COG3378 Location: 2962-4477 bp Feature: domain Description: COG3378 Location: 2962-4477 bp Feature: gene Location: 5101-6708 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5392-5989 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5392-5989 bp Feature: domain Description: TIR_2 Location: 6313-6673 bp Feature: domain Description: TIR_2 Location: 631 3-6673 bp Feature: gene Location: 6857-7196 bp Feature: domain Description: HTH_Tnp_1 Location: 6872-6989 bp Feature: domain Description: HTH_Tnp_1 Location: 6872-6989 bp Feature: gene Location: 8443-9060 bp Feature: domain Description: CsgD Location: 8863-9037 bp Feature: domain Description: CsgD Location: 8863-9037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), HTH_Tnp_1 (pfam01527), CsgD (COG2771)