myRT

myRT report for GCA_002107505.1_ASM210750v1

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Seq: NBRZ01000002.1 Salmonella enterica subsp. diarizonae serovar Rough:r:z strain NY_FSL S10-1123 NODE_2_length_464437_cov_44.7727_ID_7169, whole genome shotgun sequence (464437 bp)
Overview 1 RT 1: 365669-369991 bp 2 RT 2: 382044-390246 bp Neighborhood of RT #1 [365669, 370002] FimA FimD RVT-GII GIIM DDE_Tnp_IS66 PHA02517 Neighborhood of RT #2 [382044, 390263] DUF2919 PRK15320 RVT_N RVT-GII RVT-GII RVT-GII GIIM PRK09411 MFS_ExuT_GudP_like Feature: gene Location: 365669-366259 bp Ori: OSG83918.1 Feature: domain Description: FimA Location: 365699-366254 bp Feature: domain Description: FimA Location: 365699-366254 bp Feature: gene Location: 366231-367685 bp Ori: OSG83919.1 Feature: domain Description: FimD Location: 366321-367512 bp Feature: domain Description: FimD Location: 366321 -36751 2 bp Feature: gene Location: 368066-369343 bp Ori: OSG83920.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368291-368975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368291 -368975 bp Feature: domain Description: GIIM Note: maturase Location: 369083-369263 bp Feature: domain Description: GIIM Note: maturase Location: 369083-369263 bp Feature: gene Location: 369444-369734 bp Feature: domain Description: DDE_Tnp_IS66 Location: 369504-369720 bp Feature: domain Description: DDE_Tnp_IS66 Location: 369504-369720 bp Feature: gene Location: 369718-370002 bp Ori: OSG83921.1 Feature: domain Description: PHA02517 Location: 369772-369991 bp Feature: domain Description: PHA0251 7 Location: 369772-369991 bp Feature: gene Location: 382044-382607 bp Ori: OSG83925.1 Feature: domain Description: DUF2919 Location: 382071-382470 bp Feature: domain Description: DUF291 9 Location: 382071 -382470 bp Feature: gene Location: 382600-383262 bp Ori: OSG83926.1 Feature: domain Description: PRK15320 Location: 382615-383248 bp Feature: domain Description: PRK1 5320 Location: 38261 5-383248 bp Feature: gene Location: 384217-385065 bp Ori: OSG83927.1 Feature: domain Description: RVT_N Location: 384271-384514 bp Feature: domain Description: RVT_N Location: 384271 -38451 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384559-385039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384559-385039 bp Feature: gene Location: 385159-385353 bp Feature: gene Location: 385443-386880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385797-386454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385797-386454 bp Feature: gene Location: 386847-387596 bp Ori: OSG83928.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386940-387093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386940-387093 bp Feature: domain Description: GIIM Note: maturase Location: 387144-387378 bp Feature: domain Description: GIIM Note: maturase Location: 3871 44-387378 bp Feature: gene Location: 387796-388701 bp Ori: OSG83929.1 Feature: domain Description: PRK09411 Location: 387802-388696 bp Feature: domain Description: PRK0941 1 Location: 387802-388696 bp Feature: gene Location: 389040-390263 bp Ori: OSG83930.1 Feature: domain Description: MFS_ExuT_GudP_like Location: 389097-390246 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 389097-390246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimA (pfam16970), FimD (COG3188), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), PHA02517 (putative transposase OrfB; Reviewed), DUF2919 (pfam11143), PRK15320 (transcriptional activator SprB; Provisional), RVT_N (pfam13655), PRK09411 (carbamate kinase; Reviewed)
MFS_ExuT_GudP_like (cd17319)

Seq: NBRZ01000020.1 Salmonella enterica subsp. diarizonae serovar Rough:r:z strain NY_FSL S10-1123 NODE_20_length_62217_cov_50.933_ID_7205, whole genome shotgun sequence (62217 bp)
Overview 1 RT 1: 54760-60311 bp Neighborhood of RT #1 [54760, 60373] GanA RVT-GII GIIM Phage_int_SAM_4 INT_RitA_C_like INT_RitB_C_like Feature: gene Location: 54760-56808 bp Ori: OSG80298.1 Feature: domain Description: GanA Location: 54793-56803 bp Feature: domain Description: GanA Location: 54793-56803 bp Feature: gene Location: 56957-57435 bp Feature: gene Location: 57568-58305 bp Ori: OSG80299.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57598-57784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57598-57784 bp Feature: domain Description: GIIM Note: maturase Location: 57838-58072 bp Feature: domain Description: GIIM Note: maturase Location: 57838-58072 bp Feature: gene Location: 58746-59396 bp Ori: OSG80304.1 Feature: domain Description: Phage_int_SAM_4 Location: 58836-59055 bp Feature: domain Description: Phage_int_SAM_4 Location: 58836-59055 bp Feature: domain Description: INT_RitA_C_like Location: 59067-59361 bp Feature: domain Description: INT_RitA_C_like Location: 59067-59361 bp Feature: gene Location: 59396-60373 bp Ori: OSG80300.1 Feature: domain Description: INT_RitB_C_like Location: 59729-60311 bp Feature: domain Description: INT_RitB_C_like Location: 5972 9-60311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GanA (COG1874), RVT-GII, GIIM (pfam08388), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797)

Seq: NBRZ01000008.1 Salmonella enterica subsp. diarizonae serovar Rough:r:z strain NY_FSL S10-1123 NODE_8_length_306987_cov_46.2654_ID_7181, whole genome shotgun sequence (306987 bp)
Overview 1 RT 1: 214507-220199 bp Neighborhood of RT #1 [214507, 220199] FimC PRK15223 RVT-UG4 Feature: gene Location: 214507-215298 bp Ori: OSG81796.1 Feature: domain Description: FimC Location: 214594-215284 bp Feature: domain Description: FimC Location: 214594-215284 bp Feature: gene Location: 215425-217938 bp Ori: OSG81797.1 Feature: domain Description: PRK15223 Location: 215434-217936 bp Feature: domain Description: PRK15223 Location: 21543 4-21793 6 bp Feature: gene Location: 217956-218930 bp Ori: OSG81798.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 218310-218757 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2183 10-218757 bp Feature: gene Location: 218976-219434 bp Feature: gene Location: 219831-220199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), PRK15223 (fimbrial biogenesis outer membrane usher protein), RVT-UG4