myRT

myRT report for GCA_002107665.1_ASM210766v1

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Seq: NCWE01000055.1 Cronobacter sakazakii strain MOD1-nm1241 csakNM1241_contig_55, whole genome shotgun sequence (122455 bp)
Overview 1 RT 1: 109896-117139 bp Neighborhood of RT #1 [109896, 117156] AAA_21 AAA_15 DUF4435 Peptidase_C92 Peptidase_C92 RVT-UG15 VbhA_like VapI TrbL_P TrbL Feature: gene Location: 109896-111365 bp Ori: PUY62011.1 Feature: domain Description: AAA_21 Location: 109953-110010 bp Feature: domain Description: AAA_21 Location: 1 09953-1 1 001 0 bp Feature: domain Description: AAA_15 Location: 110238-110607 bp Feature: domain Description: AAA_1 5 Location: 1 1 0238-1 1 0607 bp Feature: domain Description: DUF4435 Location: 110763-111054 bp Feature: domain Description: DUF4435 Location: 1 1 0763-1 1 1 054 bp Feature: gene Location: 111954-112721 bp Ori: PUY62012.1 Feature: domain Description: Peptidase_C92 Location: 112125-112341 bp Feature: domain Description: Peptidase_C92 Location: 1 1 21 25-1 1 2341 bp Feature: domain Description: Peptidase_C92 Location: 112476-112536 bp Feature: domain Description: Peptidase_C92 Location: 1 1 2476-1 1 2536 bp Feature: gene Location: 112830-114137 bp Ori: PUY62025.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 112935-113349 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 1 1 2935-1 1 3349 bp Feature: gene Location: 115249-115683 bp Ori: PUY62013.1 Gene: higA Feature: domain Description: VbhA_like Location: 115264-115426 bp Feature: domain Description: VbhA_like Location: 1 1 5264-1 1 5426 bp Feature: domain Description: VapI Location: 115441-115678 bp Feature: domain Description: VapI Location: 1 1 5441 -1 1 5678 bp Feature: gene Location: 115765-117156 bp Ori: PUY62014.1 Gene: trbL Feature: domain Description: TrbL_P Location: 115843-116740 bp Feature: domain Description: TrbL_P Location: 1 1 5843-1 1 6740 bp Feature: domain Description: TrbL Location: 116875-117139 bp Feature: domain Description: TrbL Location: 1 1 6875-1 1 71 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), AAA_15 (pfam13175), DUF4435 (pfam14491), Peptidase_C92 (pfam05708), RVT-UG15, VbhA_like (cl17006), VapI (COG3093), TrbL_P (TIGR02783), TrbL (pfam04610)

Seq: NCWE01000072.1 Cronobacter sakazakii strain MOD1-nm1241 csakNM1241_contig_72, whole genome shotgun sequence (17190 bp)
Overview 1 RT 1: 1-4542 bp Neighborhood of RT #1 [1, 4550] COG5519 Ogr_Delta RVT-Retrons PRK09692 Feature: gene Location: 1-180 bp Ori: PUY60136.1 Feature: domain Description: COG5519 Location: 10-163 bp Feature: domain Description: COG5519 Location: 10-163 bp Feature: gene Location: 460-732 bp Ori: PUY60137.1 Feature: domain Description: Ogr_Delta Location: 481-619 bp Feature: domain Description: Ogr_Delta Location: 481-619 bp Feature: gene Location: 1506-2693 bp Ori: PUY60138.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1653-2226 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1653-2 2 2 6 bp Feature: gene Location: 2680-3387 bp Feature: gene Location: 3384-4550 bp Ori: PUY60140.1 Feature: domain Description: PRK09692 Location: 3393-4542 bp Feature: domain Description: PRK09692 Location: 3393-4542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5519 (Uncharcterized protein, DUF927 family ), Ogr_Delta (pfam04606), RVT-Retrons, PRK09692 (Integrase; provisional)