myRT

myRT report for GCA_002108875.1_ASM210887v1

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Seq: NAFG01000177.1 Bradyrhizobium canariense strain UBMA183 Contig177, whole genome shotgun sequence (316927 bp)
Overview 1 RT 1: 237686-244833 bp Neighborhood of RT #1 [237686, 244907] Resolvase Recombinase Zn_ribbon_recom RVT-GII fkbM_fam PRK09579 Feature: gene Location: 237686-239389 bp Ori: OSI87616.1 Feature: domain Description: Resolvase Location: 237716-238139 bp Feature: domain Description: Resolvase Location: 23771 6-2381 39 bp Feature: domain Description: Recombinase Location: 238208-238574 bp Feature: domain Description: Recombinase Location: 238208-238574 bp Feature: domain Description: Zn_ribbon_recom Location: 238652-238799 bp Feature: domain Description: Zn_ribbon_recom Location: 238652-238799 bp Feature: gene Location: 239815-239886 bp Feature: gene Location: 240286-241240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240724-240895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240724-240895 bp Feature: gene Location: 241491-241682 bp Ori: OSI87617.1 Feature: domain Description: fkbM_fam Location: 241569-241662 bp Feature: domain Description: fkbM_fam Location: 241 569-241 662 bp Feature: gene Location: 241803-244907 bp Ori: OSI87687.1 Feature: domain Description: PRK09579 Location: 241806-244833 bp Feature: domain Description: PRK09579 Location: 241 806-244833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII, fkbM_fam (TIGR01444), PRK09579 (multidrug efflux RND transporter permease subunit)

Seq: NAFG01000155.1 Bradyrhizobium canariense strain UBMA183 Contig155, whole genome shotgun sequence (92759 bp)
Overview 1 RT 1: 58653-67639 bp Neighborhood of RT #1 [58653, 67683] GalE RVT-GII RVT-CRISPR-like RT_G2_intron Big_6 Big_6 W_rich_C W_rich_C ArpD Feature: gene Location: 58653-59123 bp Feature: gene Location: 59770-60789 bp Ori: OSI93804.1 Feature: domain Description: GalE Location: 59818-60766 bp Feature: domain Description: GalE Location: 59818-60766 bp Feature: gene Location: 61342-61493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61393-61492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61393-61492 bp Feature: gene Location: 62039-62745 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 62273-62447 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 62 2 73-62 447 bp Feature: domain Description: RT_G2_intron Location: 62657-62702 bp Feature: domain Description: RT_G2 _intron Location: 62 657-62 702 bp Feature: gene Location: 63203-65653 bp Ori: OSI93805.1 Feature: domain Description: Big_6 Location: 63965-64169 bp Feature: domain Description: Big_6 Location: 63965-64169 bp Feature: domain Description: Big_6 Location: 64193-64439 bp Feature: domain Description: Big_6 Location: 64193-64439 bp Feature: domain Description: W_rich_C Location: 64544-64874 bp Feature: domain Description: W_rich_C Location: 64544-64874 bp Feature: domain Description: W_rich_C Location: 64964-65294 bp Feature: domain Description: W_rich_C Location: 64964-652 94 bp Feature: gene Location: 65980-67683 bp Ori: OSI93836.1 Feature: domain Description: ArpD Location: 65989-67639 bp Feature: domain Description: ArpD Location: 65989-67639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GalE (COG1087), RVT-GII, RVT-CRISPR, RT_G2_intron (cd01651), Big_6 (pfam17936), W_rich_C (pfam07483), ArpD (COG4618)

Seq: NAFG01000127.1 Bradyrhizobium canariense strain UBMA183 Contig127, whole genome shotgun sequence (22936 bp)
Overview 1 RT 1: 11790-16916 bp Neighborhood of RT #1 [11790, 16930] TesB RVT-GII PLN02864 ACAD_FadE2 Feature: gene Location: 11790-12650 bp Ori: OSI96626.1 Feature: domain Description: TesB Location: 11802-12642 bp Feature: domain Description: TesB Location: 11802-12642 bp Feature: gene Location: 13073-13297 bp Feature: gene Location: 13278-13484 bp Ori: OSI96628.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13281-13479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 281-13 479 bp Feature: gene Location: 14695-15555 bp Ori: OSI96629.1 Feature: domain Description: PLN02864 Location: 14704-15532 bp Feature: domain Description: PLN02864 Location: 14704-1553 2 bp Feature: gene Location: 15704-16930 bp Ori: OSI96633.1 Feature: domain Description: ACAD_FadE2 Location: 15728-16916 bp Feature: domain Description: ACAD_FadE2 Location: 15728-16916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TesB (COG1946), RVT-GII, PLN02864 (enoyl-CoA hydratase), ACAD_FadE2 (cd01155)