myRT

myRT report for GCA_002108995.1_ASM210899v1

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Seq: NAFD01000134.1 Bradyrhizobium canariense strain UBMA171 Contig134, whole genome shotgun sequence (22936 bp)
Overview 1 RT 1: 11790-16916 bp Neighborhood of RT #1 [11790, 16930] TesB RVT-GII PLN02864 ACAD_FadE2 Feature: gene Location: 11790-12650 bp Ori: OSI79128.1 Feature: domain Description: TesB Location: 11802-12642 bp Feature: domain Description: TesB Location: 1 1 802-1 2642 bp Feature: gene Location: 13073-13297 bp Feature: gene Location: 13278-13484 bp Ori: OSI79130.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13281-13479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3281 -1 3479 bp Feature: gene Location: 14695-15555 bp Ori: OSI79131.1 Feature: domain Description: PLN02864 Location: 14704-15532 bp Feature: domain Description: PLN02864 Location: 1 4704-1 5532 bp Feature: gene Location: 15704-16930 bp Ori: OSI79136.1 Feature: domain Description: ACAD_FadE2 Location: 15728-16916 bp Feature: domain Description: ACAD_FadE2 Location: 1 5728-1 691 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TesB (COG1946), RVT-GII, PLN02864 (enoyl-CoA hydratase), ACAD_FadE2 (cd01155)

Seq: NAFD01000165.1 Bradyrhizobium canariense strain UBMA171 Contig165, whole genome shotgun sequence (76800 bp)
Overview 1 RT 1: 9118-18148 bp Neighborhood of RT #1 [9118, 18148] ArpD Big_6 Big_6 W_rich_C W_rich_C RVT-CRISPR-like RT_G2_intron RVT-GII GalE Feature: gene Location: 9118-10821 bp Ori: OSI72486.1 Feature: domain Description: ArpD Location: 9127-10777 bp Feature: domain Description: ArpD Location: 912 7-10777 bp Feature: gene Location: 11148-13598 bp Ori: OSI72445.1 Feature: domain Description: Big_6 Location: 11910-12114 bp Feature: domain Description: Big_6 Location: 11910-12 114 bp Feature: domain Description: Big_6 Location: 12138-12384 bp Feature: domain Description: Big_6 Location: 12 138-12 384 bp Feature: domain Description: W_rich_C Location: 12489-12819 bp Feature: domain Description: W_rich_C Location: 12 489-12 819 bp Feature: domain Description: W_rich_C Location: 12909-13239 bp Feature: domain Description: W_rich_C Location: 12 909-132 39 bp Feature: gene Location: 14056-14762 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 14290-14464 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 142 90-14464 bp Feature: domain Description: RT_G2_intron Location: 14674-14719 bp Feature: domain Description: RT_G2 _intron Location: 14674-14719 bp Feature: gene Location: 15308-15459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15359-15458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15359-15458 bp Feature: gene Location: 16012-17031 bp Ori: OSI72446.1 Feature: domain Description: GalE Location: 16060-17008 bp Feature: domain Description: GalE Location: 16060-17008 bp Feature: gene Location: 17678-18148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArpD (COG4618), Big_6 (pfam17936), W_rich_C (pfam07483), RVT-CRISPR, RT_G2_intron (cd01651), RVT-GII, GalE (COG1087)

Seq: NAFD01000191.1 Bradyrhizobium canariense strain UBMA171 Contig191, whole genome shotgun sequence (317022 bp)
Overview 1 RT 1: 71921-79186 bp Neighborhood of RT #1 [71921, 79186] PRK09579 fkbM_fam RVT-GII Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 71921-75025 bp Ori: OSI65984.1 Feature: domain Description: PRK09579 Location: 71924-74951 bp Feature: domain Description: PRK09579 Location: 71924-74951 bp Feature: gene Location: 75146-75337 bp Ori: OSI65779.1 Feature: domain Description: fkbM_fam Location: 75224-75317 bp Feature: domain Description: fkbM_fam Location: 75224-753 17 bp Feature: gene Location: 75588-76542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76026-76197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76026-76197 bp Feature: gene Location: 77421-79124 bp Ori: OSI65780.1 Feature: domain Description: Resolvase Location: 77451-77874 bp Feature: domain Description: Resolvase Location: 77451-77874 bp Feature: domain Description: Recombinase Location: 77943-78309 bp Feature: domain Description: Recombinase Location: 77943 -783 09 bp Feature: domain Description: Zn_ribbon_recom Location: 78387-78534 bp Feature: domain Description: Zn_ribbon_recom Location: 783 87-7853 4 bp Feature: gene Location: 79109-79186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09579 (multidrug efflux RND transporter permease subunit), fkbM_fam (TIGR01444), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)