myRT

myRT report for GCA_002109245.1_S_Newport_SHSN007_v01

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Seq: AROQ01000108.1 Salmonella enterica subsp. enterica serovar Newport str. SHSN007 contig15_1, whole genome shotgun sequence (81418 bp)
Overview 1 RT 1: 29936-36768 bp Neighborhood of RT #1 [29936, 36776] trmE INT_P4_C RVT-Retrons PRK10473 Feature: gene Location: 29936-31300 bp Feature: domain Description: trmE Location: 29939-31298 bp Feature: domain Description: trmE Location: 29939-31 298 bp Feature: gene Location: 31978-32400 bp Feature: domain Description: INT_P4_C Location: 31984-32332 bp Feature: domain Description: INT_P4_C Location: 31 984-32332 bp Feature: gene Location: 32482-33414 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32638-33181 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32638-331 81 bp Feature: gene Location: 33740-34609 bp Feature: gene Location: 35589-36776 bp Feature: domain Description: PRK10473 Location: 35592-36768 bp Feature: domain Description: PRK1 0473 Location: 35592-36768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trmE (PRK05291), INT_P4_C (cd00801), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter)

Seq: AROQ01000054.1 Salmonella enterica subsp. enterica serovar Newport str. SHSN007 contig4_5, whole genome shotgun sequence (65788 bp)
Overview 1 RT 1: 52565-58479 bp Neighborhood of RT #1 [52565, 58479] DUF5375 Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 HTH_Tnp_1 Feature: gene Location: 52565-52885 bp Feature: domain Description: DUF5375 Location: 52568-52883 bp Feature: domain Description: DUF5375 Location: 52 568-52 883 bp Feature: gene Location: 52900-55233 bp Feature: domain Description: Prim_Zn_Ribbon Location: 52990-53098 bp Feature: domain Description: Prim_Zn_Ribbon Location: 52 990-53098 bp Feature: domain Description: COG3378 Location: 53707-55222 bp Feature: domain Description: COG3378 Location: 53707-552 2 2 bp Feature: gene Location: 55846-57453 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56137-56734 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56137-56734 bp Feature: domain Description: TIR_2 Location: 57058-57418 bp Feature: domain Description: TIR_2 Location: 57058-57418 bp Feature: gene Location: 57503-57940 bp Feature: domain Description: HTH_Tnp_1 Location: 57518-57635 bp Feature: domain Description: HTH_Tnp_1 Location: 57518-57635 bp Feature: gene Location: 58321-58479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), HTH_Tnp_1 (pfam01527)