myRT

myRT report for GCA_002109445.1_ASM210944v1

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Seq: MVIN01000072.1 Escherichia coli strain FAM21843 FAM21843_contig_72, whole genome shotgun sequence (16125 bp)
Overview 1 RT 1: 375-5949 bp Neighborhood of RT #1 [375, 5984] COG3547 RVT-GII GIIM mhpA Feature: gene Location: 375-1451 bp Feature: domain Description: COG3547 Location: 414-1335 bp Feature: domain Description: COG3547 Location: 41 4-1 335 bp Feature: gene Location: 1700-1906 bp Feature: gene Location: 1993-3516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2266-2998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2266-2998 bp Feature: domain Description: GIIM Note: maturase Location: 3073-3271 bp Feature: domain Description: GIIM Note: maturase Location: 3073-3271 bp Feature: gene Location: 4147-4440 bp Feature: gene Location: 4623-5984 bp Feature: domain Description: mhpA Location: 4629-5949 bp Feature: domain Description: mhpA Location: 4629-5949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), mhpA (PRK06183)

Seq: MVIN01000094.1 Escherichia coli strain FAM21843 FAM21843_contig_94, whole genome shotgun sequence (24670 bp)
Overview 1 RT 1: 19473-23687 bp Neighborhood of RT #1 [19473, 24469] HTH_XRE RVT-Retrons PRK13889 CoiA Feature: gene Location: 19473-19688 bp Feature: gene Location: 19779-20060 bp Feature: domain Description: HTH_XRE Location: 19794-19959 bp Feature: domain Description: HTH_XRE Location: 19794-19959 bp Feature: gene Location: 20053-21153 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20194-20746 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 0194-2 0746 bp Feature: gene Location: 21230-22732 bp Feature: domain Description: PRK13889 Location: 21233-21812 bp Feature: domain Description: PRK13889 Location: 2 12 33-2 1812 bp Feature: gene Location: 23468-24469 bp Feature: domain Description: CoiA Location: 23549-23687 bp Feature: domain Description: CoiA Location: 2 3549-2 3687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), CoiA (pfam06054)