myRT

myRT report for GCA_002110465.1_croco123

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Seq: NEED01000002.1 Unicellular cyanobacterium SU2 NODE_11_length_172680_cov_89.6181_com, whole genome shotgun sequence (172680 bp)
Overview 1 RT 1: 39852-44375 bp Neighborhood of RT #1 [39852, 44383] RRM_1 RVT-Retrons AIM24 TIGR00266 Feature: gene Location: 39852-40517 bp Feature: domain Description: RRM_1 Location: 40014-40227 bp Feature: domain Description: RRM_1 Location: 4001 4-40227 bp Feature: gene Location: 40542-41099 bp Feature: gene Location: 41116-42246 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41344-41950 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 344-41 950 bp Feature: gene Location: 43028-43705 bp Feature: domain Description: AIM24 Location: 43031-43697 bp Feature: domain Description: AIM24 Location: 43031 -43697 bp Feature: gene Location: 43721-44383 bp Feature: domain Description: TIGR00266 Location: 43724-44375 bp Feature: domain Description: TIGR00266 Location: 43724-44375 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RRM_1 (smart00361), RVT-Retrons, AIM24 (pfam01987), TIGR00266 (TIGR00266 family protein)

Seq: NEED01000023.1 Unicellular cyanobacterium SU2 NODE_1_length_653288_cov_92.5399_comp, whole genome shotgun sequence (653288 bp)
Overview 1 RT 1: 248820-252719 bp Neighborhood of RT #1 [248820, 252727] AglD2 RVT_N RVT-GII PRK02971 Feature: gene Location: 248820-249830 bp Feature: domain Description: AglD2 Location: 248874-249768 bp Feature: domain Description: AglD2 Location: 2 48874-2 49768 bp Feature: gene Location: 249909-250055 bp Feature: gene Location: 251075-251983 bp Feature: domain Description: RVT_N Location: 251111-251357 bp Feature: domain Description: RVT_N Location: 2 51111-2 51357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251402-251957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 51402 -2 51957 bp Feature: gene Location: 252083-252220 bp Feature: gene Location: 252332-252727 bp Feature: domain Description: PRK02971 Location: 252383-252719 bp Feature: domain Description: PRK02 971 Location: 2 52 383-2 52 719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AglD2 (COG0392), RVT_N (pfam13655), RVT-GII, PRK02971 (4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional)

Seq: NEED01000037.1 Unicellular cyanobacterium SU2 NODE_255_length_6170_cov_128.342_comp, whole genome shotgun sequence (6170 bp)
Overview 1 RT 1: 3-4190 bp Neighborhood of RT #1 [3, 4190] RVT_N RVT-GII GIIM McrA HemolysinCabind HemolysinCabind HemolysinCabind Feature: gene Location: 3-269 bp Feature: gene Location: 353-2107 bp Feature: domain Description: RVT_N Location: 416-662 bp Feature: domain Description: RVT_N Location: 416-662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1403 bp Feature: domain Description: GIIM Note: maturase Location: 1505-1721 bp Feature: domain Description: GIIM Note: maturase Location: 1505-1721 bp Feature: domain Description: McrA Location: 1796-2093 bp Feature: domain Description: McrA Location: 1796-2093 bp Feature: gene Location: 2803-3675 bp Feature: domain Description: HemolysinCabind Location: 3085-3190 bp Feature: domain Description: HemolysinCabind Location: 3 085-3 190 bp Feature: domain Description: HemolysinCabind Location: 3289-3337 bp Feature: domain Description: HemolysinCabind Location: 3 289-3 3 3 7 bp Feature: domain Description: HemolysinCabind Location: 3490-3568 bp Feature: domain Description: HemolysinCabind Location: 3 490-3 568 bp Feature: gene Location: 3765-4190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), HemolysinCabind (pfam00353)

Seq: NEED01000073.1 Unicellular cyanobacterium SU2 NODE_5_length_310337_cov_98.4593_comp, whole genome shotgun sequence (310337 bp)
Overview 1 RT 1: 250084-255689 bp Neighborhood of RT #1 [250084, 255727] pyrG RVT-GII GIIM BaeS FhaC Feature: gene Location: 250084-251703 bp Feature: domain Description: pyrG Location: 250087-251680 bp Feature: domain Description: pyrG Location: 250087-251680 bp Feature: gene Location: 251736-251912 bp Feature: gene Location: 252017-252499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252026-252152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252026-252152 bp Feature: domain Description: GIIM Note: maturase Location: 252257-252488 bp Feature: domain Description: GIIM Note: maturase Location: 252257-2524 88 bp Feature: gene Location: 252808-254358 bp Feature: domain Description: BaeS Location: 253126-254002 bp Feature: domain Description: BaeS Location: 253126-254 002 bp Feature: gene Location: 254390-255727 bp Feature: domain Description: FhaC Location: 254396-255689 bp Feature: domain Description: FhaC Location: 254 396-255689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pyrG (PRK05380), RVT-GII, GIIM (pfam08388), BaeS (COG0642), FhaC (COG2831)

Seq: NEED01000075.1 Unicellular cyanobacterium SU2 NODE_6_length_259924_cov_99.8793_comp, whole genome shotgun sequence (259924 bp)
Overview 1 RT 1: 85569-92974 bp Neighborhood of RT #1 [85569, 92985] 2A0602 UvrD_C RVT-UG25 2OG-FeII_Oxy_2 Feature: gene Location: 85569-88685 bp Feature: domain Description: 2A0602 Location: 85578-88653 bp Feature: domain Description: 2A0602 Location: 85 5 78-8865 3 bp Feature: gene Location: 88687-89265 bp Feature: domain Description: UvrD_C Location: 88711-89215 bp Feature: domain Description: UvrD_C Location: 88711-89215 bp Feature: gene Location: 89285-91354 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 90785-91175 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 90785 -91175 bp Feature: gene Location: 91472-92338 bp Feature: gene Location: 92407-92985 bp Feature: domain Description: 2OG-FeII_Oxy_2 Location: 92572-92974 bp Feature: domain Description: 2OG-FeII_Oxy_2 Location: 925 72-92974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A0602 (TIGR00915), UvrD_C (pfam13361), RVT-UG25, 2OG-FeII_Oxy_2 (pfam13532)

Seq: NEED01000078.1 Unicellular cyanobacterium SU2 NODE_7_length_221324_cov_74.5062_comp, whole genome shotgun sequence (221324 bp)
Overview 1 RT 1: 3255-6498 bp 2 RT 2: 20969-25974 bp Neighborhood of RT #1 [3255, 6498] Uma2 DUF820 RVT-UG16 Neighborhood of RT #2 [20969, 25974] TM_helix TM_helix TM_helix TM_helix TM_helix BcsQ RVT-GII Feature: gene Location: 3255-3818 bp Feature: domain Description: Uma2 Location: 3264-3807 bp Feature: domain Description: Uma2 Location: 326 4-3807 bp Feature: gene Location: 3876-4442 bp Feature: domain Description: DUF820 Location: 3948-4419 bp Feature: domain Description: DUF820 Location: 3948-4419 bp Feature: gene Location: 4607-6115 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 4982-5387 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 4982-5387 bp Feature: gene Location: 6155-6283 bp Feature: gene Location: 6346-6498 bp Feature: gene Location: 20969-22570 bp Feature: domain Description: TM_helix Location: 21062-21167 bp Feature: domain Description: TM_helix Location: 2106 2-2116 7 bp Feature: domain Description: TM_helix Location: 21308-21452 bp Feature: domain Description: TM_helix Location: 21308-21452 bp Feature: domain Description: TM_helix Location: 21599-21737 bp Feature: domain Description: TM_helix Location: 21599-21737 bp Feature: domain Description: TM_helix Location: 21881-22025 bp Feature: domain Description: TM_helix Location: 21881-22025 bp Feature: domain Description: TM_helix Location: 22226-22334 bp Feature: domain Description: TM_helix Location: 22226 -22334 bp Feature: gene Location: 22698-23582 bp Feature: domain Description: BcsQ Location: 22707-23577 bp Feature: domain Description: BcsQ Location: 22707-23577 bp Feature: gene Location: 23790-24110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23892-24051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23892-24051 bp Feature: gene Location: 24573-25655 bp Feature: gene Location: 25687-25974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uma2 (pfam05685), DUF820, RVT-UG16, TM_helix (pfam05552), BcsQ (COG1192), RVT-GII