myRT

myRT report for GCA_002110545.1_ASM211054v1

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Seq: ADJB01000103.1 Escherichia coli H386 supercont1.103, whole genome shotgun sequence (9064 bp)
Overview 1 RT 1: 9-3917 bp Neighborhood of RT #1 [9, 3917] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 9-275 bp Feature: gene Location: 933-2600 bp Feature: RT Description: RVT_N Location: 981-1218 bp Feature: RT Description: RVT_N Location: 981 -1 21 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1269-1911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 269-1 91 1 bp Feature: domain Description: GIIM Note: maturase Location: 1962-2196 bp Feature: domain Description: GIIM Note: maturase Location: 1 962-21 96 bp Feature: domain Description: HNHc Note: nucleases Location: 2406-2565 bp Feature: domain Description: HNHc Note: nucleases Location: 2406-2565 bp Feature: gene Location: 3427-3699 bp Feature: gene Location: 3636-3917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: ADJB01000062.1 Escherichia coli H386 supercont1.62, whole genome shotgun sequence (83244 bp)
Overview 1 RT 1: 62858-67574 bp Neighborhood of RT #1 [62858, 67576] PRK13889 RVT-Retrons HTH_XRE PHA02517 Feature: gene Location: 62858-63295 bp Feature: gene Location: 64236-65738 bp Feature: domain Description: PRK13889 Location: 64239-64818 bp Feature: domain Description: PRK13889 Location: 642 39-64818 bp Feature: gene Location: 65815-66915 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65956-66508 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65956-66508 bp Feature: gene Location: 66908-67189 bp Feature: domain Description: HTH_XRE Location: 66923-67088 bp Feature: domain Description: HTH_XRE Location: 6692 3-67088 bp Feature: gene Location: 67370-67576 bp Feature: domain Description: PHA02517 Location: 67373-67574 bp Feature: domain Description: PHA02 517 Location: 67373-67574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530), PHA02517 (putative transposase OrfB; Reviewed)

Seq: ADJB01000009.1 Escherichia coli H386 supercont1.9, whole genome shotgun sequence (4137 bp)
Overview 1 RT 1: 166-4136 bp Neighborhood of RT #1 [166, 4137] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 166-492 bp Feature: domain Description: InsE Location: 169-490 bp Feature: domain Description: InsE Location: 169-490 bp Feature: gene Location: 489-1103 bp Feature: domain Description: PHA02517 Location: 552-1104 bp Feature: domain Description: PHA02517 Location: 552-1104 bp Feature: gene Location: 2277-3800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2550-3282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2550-3 282 bp Feature: domain Description: GIIM Note: maturase Location: 3357-3555 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 57-3 555 bp Feature: gene Location: 3977-4137 bp Feature: domain Description: PHA02517 Location: 3980-4136 bp Feature: domain Description: PHA02517 Location: 3 980-413 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)