myRT

myRT report for GCA_002111685.1_ASM211168v1

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Seq: MTYM01000192.1 Pseudomonas syringae pv. actinidiae strain C68 BV341_192, whole genome shotgun sequence (4907 bp)
Overview 1 RT 1: 1585-3857 bp Neighborhood of RT #1 [1585, 4609] UvrD_C RVT-UG9 Feature: gene Location: 1585-2529 bp Feature: gene Location: 2890-3612 bp Ori: OSN14209.1 Feature: domain Description: UvrD_C Location: 3346-3541 bp Feature: domain Description: UvrD_C Location: 3346-3541 bp Feature: gene Location: 3578-4609 bp Ori: OSN14210.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3581-3857 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3581 -3857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: MTYM01000249.1 Pseudomonas syringae pv. actinidiae strain C68 BV341_249, whole genome shotgun sequence (1587 bp)
Overview 1 RT 1: 4-1165 bp Neighborhood of RT #1 [4, 1272] RVT-GII GIIM Feature: gene Location: 4-1272 bp Ori: OSN12854.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 08-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTYM01000057.1 Pseudomonas syringae pv. actinidiae strain C68 BV341_57, whole genome shotgun sequence (37749 bp)
Overview 1 RT 1: 30325-37667 bp Neighborhood of RT #1 [30325, 37667] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30325-31413 bp Ori: OSN25500.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 30340-31405 bp Feature: domain Description: modC_ABC Location: 3 03 40-3 1405 bp Feature: gene Location: 31502-32557 bp Ori: OSN25501.1 Feature: domain Description: Top1 Location: 31535-32549 bp Feature: domain Description: Top1 Location: 3 153 5-3 2549 bp Feature: gene Location: 33388-35223 bp Ori: OSN25502.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33649-34462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 649-3 4462 bp Feature: domain Description: Intron_maturas2 Location: 34558-34873 bp Feature: domain Description: Intron_maturas2 Location: 3 4558-3 4873 bp Feature: domain Description: HNHc Note: nucleases Location: 34996-35161 bp Feature: domain Description: HNHc Note: nucleases Location: 3 4996-3 5161 bp Feature: gene Location: 35661-36296 bp Ori: OSN25503.1 Feature: domain Description: DUF2625 Location: 35673-36261 bp Feature: domain Description: DUF2625 Location: 3 5673 -3 6261 bp Feature: gene Location: 37437-37667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: MTYM01000039.1 Pseudomonas syringae pv. actinidiae strain C68 BV341_39, whole genome shotgun sequence (48988 bp)
Overview 1 RT 1: 42253-48906 bp Neighborhood of RT #1 [42253, 48906] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 42253-42576 bp Ori: OSN26279.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 42277-42487 bp Feature: domain Description: trans_reg_C Location: 4 2277-4 24 87 bp Feature: gene Location: 43383-44801 bp Ori: OSN26280.1 Feature: domain Description: ComA-like_MBL-fold Location: 43932-44418 bp Feature: domain Description: ComA-like_MBL-fold Location: 4 3932-4 4 4 18 bp Feature: gene Location: 45245-46954 bp Ori: OSN26281.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45398-45995 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 5398-4 5995 bp Feature: gene Location: 47452-48675 bp Ori: OSN26282.1 Feature: domain Description: COG3666 Location: 47494-47935 bp Feature: domain Description: COG3666 Location: 4 74 94 -4 7935 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48412-48634 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4 84 12-4 8634 bp Feature: gene Location: 48676-48906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)