myRT

myRT report for GCA_002111755.1_ASM211175v1

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Seq: MTYP01000242.1 Pseudomonas syringae pv. actinidiae strain C73 BV344_242, whole genome shotgun sequence (1800 bp)
Overview 1 RT 1: 377-1610 bp Neighborhood of RT #1 [377, 1744] RVT-GII GIIM Feature: gene Location: 377-1744 bp Ori: OSN32388.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 710-1325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 0-1 325 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1610 bp Feature: domain Description: GIIM Note: maturase Location: 1 382-1 61 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTYP01000258.1 Pseudomonas syringae pv. actinidiae strain C73 BV344_258, whole genome shotgun sequence (1471 bp)
Overview 1 RT 1: 4-1165 bp Neighborhood of RT #1 [4, 1272] RVT-GII GIIM Feature: gene Location: 4-1272 bp Ori: OSN31892.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 08-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTYP01000230.1 Pseudomonas syringae pv. actinidiae strain C73 BV344_230, whole genome shotgun sequence (2057 bp)
Overview 1 RT 1: 94-727 bp Neighborhood of RT #1 [94, 1308] RVT-Retrons Feature: gene Location: 94-1308 bp Ori: OSN32766.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 130-727 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 0-727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: MTYP01000239.1 Pseudomonas syringae pv. actinidiae strain C73 BV344_239, whole genome shotgun sequence (1872 bp)
Overview 1 RT 1: 505-1615 bp Neighborhood of RT #1 [505, 1788] RVT-GII GIIM Feature: gene Location: 505-1788 bp Ori: OSN32473.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 5-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Feature: domain Description: GIIM Note: maturase Location: 14 05-1615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTYP01000058.1 Pseudomonas syringae pv. actinidiae strain C73 BV344_58, whole genome shotgun sequence (37477 bp)
Overview 1 RT 1: 30334-36270 bp Neighborhood of RT #1 [30334, 36305] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30334-31422 bp Ori: OSN42304.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 30349-31414 bp Feature: domain Description: modC_ABC Location: 30349-31414 bp Feature: gene Location: 31511-32566 bp Ori: OSN42305.1 Feature: domain Description: Top1 Location: 31544-32558 bp Feature: domain Description: Top1 Location: 315 44-325 5 8 bp Feature: gene Location: 33397-35232 bp Ori: OSN42306.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33658-34471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3365 8-34471 bp Feature: domain Description: Intron_maturas2 Location: 34567-34882 bp Feature: domain Description: Intron_maturas2 Location: 345 67-34882 bp Feature: domain Description: HNHc Note: nucleases Location: 35005-35170 bp Feature: domain Description: HNHc Note: nucleases Location: 35 005 -35 170 bp Feature: gene Location: 35670-36305 bp Ori: OSN42307.1 Feature: domain Description: DUF2625 Location: 35682-36270 bp Feature: domain Description: DUF2625 Location: 35 682-36270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: MTYP01000212.1 Pseudomonas syringae pv. actinidiae strain C73 BV344_212, whole genome shotgun sequence (2903 bp)
Overview 1 RT 1: 175-2726 bp Neighborhood of RT #1 [175, 2785] RVT-UG9 PRK14975 Feature: gene Location: 175-1245 bp Ori: OSN33454.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 178-454 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 178-454 bp Feature: gene Location: 1238-2785 bp Ori: OSN33455.1 Gene: polA_2 Feature: domain Description: PRK14975 Location: 2006-2726 bp Feature: domain Description: PRK14975 Location: 2006 -2726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional)