myRT

myRT report for GCA_002111885.1_ASM211188v1

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Seq: MTYW01000059.1 Pseudomonas syringae pv. actinidiae strain K7 BV352_59, whole genome shotgun sequence (37296 bp)
Overview 1 RT 1: 1219-7182 bp Neighborhood of RT #1 [1219, 7190] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1219-1854 bp Ori: OSN81832.1 Feature: domain Description: DUF2625 Location: 1231-1819 bp Feature: domain Description: DUF2625 Location: 1 231 -1 81 9 bp Feature: gene Location: 2292-4127 bp Ori: OSN81833.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2553-3366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2553-3366 bp Feature: domain Description: Intron_maturas2 Location: 3462-3777 bp Feature: domain Description: Intron_maturas2 Location: 3462-3777 bp Feature: domain Description: HNHc Note: nucleases Location: 3900-4065 bp Feature: domain Description: HNHc Note: nucleases Location: 3900-4065 bp Feature: gene Location: 4958-6013 bp Ori: OSN81834.1 Feature: domain Description: Top1 Location: 4991-6005 bp Feature: domain Description: Top1 Location: 4991 -6005 bp Feature: gene Location: 6102-7190 bp Ori: OSN81835.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6117-7182 bp Feature: domain Description: modC_ABC Location: 61 1 7-71 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: MTYW01000050.1 Pseudomonas syringae pv. actinidiae strain K7 BV352_50, whole genome shotgun sequence (39882 bp)
Overview 1 RT 1: 34078-38380 bp Neighborhood of RT #1 [34078, 39339] Chi1 FN3 FN3 ChiA1_BD COG3666 DDE_Tnp_1_6 RVT-Retrons Feature: gene Location: 34078-35820 bp Ori: OSN82336.1 Gene: chiD Feature: domain Description: Chi1 Location: 34105-35065 bp Feature: domain Description: Chi1 Location: 34105-35065 bp Feature: domain Description: FN3 Location: 35098-35329 bp Feature: domain Description: FN3 Location: 35098-3532 9 bp Feature: domain Description: FN3 Location: 35368-35626 bp Feature: domain Description: FN3 Location: 35368-3562 6 bp Feature: domain Description: ChiA1_BD Location: 35656-35785 bp Feature: domain Description: ChiA1_BD Location: 35656-35785 bp Feature: gene Location: 35879-37132 bp Ori: OSN82337.1 Feature: domain Description: COG3666 Location: 35921-36362 bp Feature: domain Description: COG3666 Location: 3592 1-36362 bp Feature: domain Description: DDE_Tnp_1_6 Location: 36839-37064 bp Feature: domain Description: DDE_Tnp_1_6 Location: 36839-37064 bp Feature: gene Location: 37630-39339 bp Ori: OSN82338.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37783-38380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37783-38380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Chi1 (COG3469), FN3 (smart00060), ChiA1_BD (cd12214), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons

Seq: MTYW01000005.1 Pseudomonas syringae pv. actinidiae strain K7 BV352_5, whole genome shotgun sequence (107549 bp)
Overview 1 RT 1: 38-3138 bp Neighborhood of RT #1 [38, 3233] RVT-GII GIIM FliK Hpt Feature: gene Location: 38-1078 bp Ori: OSN86209.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44-659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44-659 bp Feature: domain Description: GIIM Note: maturase Location: 716-944 bp Feature: domain Description: GIIM Note: maturase Location: 716-944 bp Feature: gene Location: 1366-2778 bp Ori: OSN86210.1 Gene: fliK Feature: domain Description: FliK Location: 1378-2704 bp Feature: domain Description: FliK Location: 13 78-2704 bp Feature: gene Location: 2877-3233 bp Ori: OSN86211.1 Feature: domain Description: Hpt Location: 2949-3138 bp Feature: domain Description: Hpt Location: 2949-3 13 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FliK (COG3144), Hpt (pfam01627)

Seq: MTYW01000196.1 Pseudomonas syringae pv. actinidiae strain K7 BV352_196, whole genome shotgun sequence (4642 bp)
Overview 1 RT 1: 225-3931 bp Neighborhood of RT #1 [225, 4014] RVT-UG9 PRK14975 T6SS_HCP Feature: gene Location: 225-1295 bp Ori: OSN76045.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 228-504 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 228-504 bp Feature: gene Location: 1288-2835 bp Ori: OSN76046.1 Gene: polA_2 Feature: domain Description: PRK14975 Location: 2056-2776 bp Feature: domain Description: PRK14 975 Location: 2056-2776 bp Feature: gene Location: 3511-4014 bp Ori: OSN76047.1 Feature: domain Description: T6SS_HCP Location: 3529-3931 bp Feature: domain Description: T6SS_HCP Location: 3529-3931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), T6SS_HCP (pfam05638)

Seq: MTYW01000040.1 Pseudomonas syringae pv. actinidiae strain K7 BV352_40, whole genome shotgun sequence (47388 bp)
Overview 1 RT 1: 42198-46046 bp Neighborhood of RT #1 [42198, 47005] trans_reg_C ComA-like_MBL-fold RVT-Retrons Feature: gene Location: 42198-42521 bp Ori: OSN82929.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 42222-42432 bp Feature: domain Description: trans_reg_C Location: 42222-42432 bp Feature: gene Location: 43328-44773 bp Ori: OSN82930.1 Feature: domain Description: ComA-like_MBL-fold Location: 43877-44363 bp Feature: domain Description: ComA-like_MBL-fold Location: 43877-44363 bp Feature: gene Location: 45296-47005 bp Ori: OSN82931.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45449-46046 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45 449-46046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons

Seq: MTYW01000258.1 Pseudomonas syringae pv. actinidiae strain K7 BV352_258, whole genome shotgun sequence (1493 bp)
Overview 1 RT 1: 4-1165 bp Neighborhood of RT #1 [4, 1272] RVT-GII GIIM Feature: gene Location: 4-1272 bp Ori: OSN74077.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-86 5 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943-116 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTYW01000244.1 Pseudomonas syringae pv. actinidiae strain K7 BV352_244, whole genome shotgun sequence (1872 bp)
Overview 1 RT 1: 85-1195 bp Neighborhood of RT #1 [85, 1368] RVT-GII GIIM Feature: gene Location: 85-1368 bp Ori: OSN74987.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325-940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325-940 bp Feature: domain Description: GIIM Note: maturase Location: 985-1195 bp Feature: domain Description: GIIM Note: maturase Location: 985-1195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)