myRT

myRT report for GCA_002111925.1_ASM211192v1

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Seq: MTYX01000321.1 Pseudomonas syringae pv. actinidiae strain NZ35 BV353_321, whole genome shotgun sequence (572 bp)
Overview 1 RT 1: 71-491 bp Neighborhood of RT #1 [71, 532] RVT-GII Feature: gene Location: 71-532 bp Ori: OSN75391.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MTYX01000242.1 Pseudomonas syringae pv. actinidiae strain NZ35 BV353_242, whole genome shotgun sequence (1760 bp)
Overview 1 RT 1: 489-1650 bp Neighborhood of RT #1 [489, 1757] RVT-GII GIIM Feature: gene Location: 489-1757 bp Ori: OSN77460.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693-1350 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1650 bp Feature: domain Description: GIIM Note: maturase Location: 142 8-1650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTYX01000193.1 Pseudomonas syringae pv. actinidiae strain NZ35 BV353_193, whole genome shotgun sequence (4951 bp)
Overview 1 RT 1: 1607-3879 bp Neighborhood of RT #1 [1607, 4631] UvrD_C RVT-UG9 Feature: gene Location: 1607-2551 bp Feature: gene Location: 2912-3634 bp Ori: OSN79894.1 Feature: domain Description: UvrD_C Location: 3368-3563 bp Feature: domain Description: UvrD_C Location: 3 3 68-3 563 bp Feature: gene Location: 3600-4631 bp Ori: OSN79895.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3603-3879 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3 603 -3 879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: MTYX01000040.1 Pseudomonas syringae pv. actinidiae strain NZ35 BV353_40, whole genome shotgun sequence (49136 bp)
Overview 1 RT 1: 41912-48818 bp Neighborhood of RT #1 [41912, 48967] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Tra5 Feature: gene Location: 41912-42235 bp Ori: OSN88206.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 41936-42146 bp Feature: domain Description: trans_reg_C Location: 4 1936-4 214 6 bp Feature: gene Location: 43042-44460 bp Ori: OSN88207.1 Feature: domain Description: ComA-like_MBL-fold Location: 43591-44077 bp Feature: domain Description: ComA-like_MBL-fold Location: 4 3591-4 4 077 bp Feature: gene Location: 44904-46613 bp Ori: OSN88208.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-45654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 5057-4 5654 bp Feature: gene Location: 47111-48334 bp Ori: OSN88209.1 Feature: domain Description: COG3666 Location: 47153-47594 bp Feature: domain Description: COG3666 Location: 4 7153-4 7594 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48071-48293 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4 8071-4 8293 bp Feature: gene Location: 48335-48967 bp Ori: OSN88210.1 Feature: domain Description: Tra5 Location: 48338-48818 bp Feature: domain Description: Tra5 Location: 4 8338-4 8818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), Tra5 (COG2801)

Seq: MTYX01000057.1 Pseudomonas syringae pv. actinidiae strain NZ35 BV353_57, whole genome shotgun sequence (38271 bp)
Overview 1 RT 1: 170-7906 bp Neighborhood of RT #1 [170, 7914] Tra5 DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 170-802 bp Ori: OSN87318.1 Feature: domain Description: Tra5 Location: 173-653 bp Feature: domain Description: Tra5 Location: 173-65 3 bp Feature: gene Location: 1943-2578 bp Ori: OSN87319.1 Feature: domain Description: DUF2625 Location: 1955-2543 bp Feature: domain Description: DUF2625 Location: 195 5 -25 43 bp Feature: gene Location: 3016-4851 bp Ori: OSN87320.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3277-4090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3277-4090 bp Feature: domain Description: Intron_maturas2 Location: 4186-4501 bp Feature: domain Description: Intron_maturas2 Location: 4186-45 01 bp Feature: domain Description: HNHc Note: nucleases Location: 4624-4789 bp Feature: domain Description: HNHc Note: nucleases Location: 4624-4789 bp Feature: gene Location: 5682-6737 bp Ori: OSN87321.1 Feature: domain Description: Top1 Location: 5715-6729 bp Feature: domain Description: Top1 Location: 5 715 -6729 bp Feature: gene Location: 6826-7914 bp Ori: OSN87322.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6841-7906 bp Feature: domain Description: modC_ABC Location: 6841-7906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)