myRT

myRT report for GCA_002111945.1_ASM211194v1

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Seq: MTYY01000042.1 Pseudomonas syringae pv. actinidiae strain NZ37 BV354_42, whole genome shotgun sequence (46428 bp)
Overview 1 RT 1: 44033-45984 bp Neighborhood of RT #1 [44033, 46091] PAAR_motif RVT-GII GIIM Feature: gene Location: 44033-44287 bp Ori: OSN93666.1 Feature: domain Description: PAAR_motif Location: 44057-44258 bp Feature: domain Description: PAAR_motif Location: 44057-44258 bp Feature: gene Location: 44298-44780 bp Feature: gene Location: 44823-46091 bp Ori: OSN93668.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45027-45684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45027-45684 bp Feature: domain Description: GIIM Note: maturase Location: 45762-45984 bp Feature: domain Description: GIIM Note: maturase Location: 45762-45984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_motif (pfam05488), RVT-GII, GIIM (pfam08388)

Seq: MTYY01000311.1 Pseudomonas syringae pv. actinidiae strain NZ37 BV354_311, whole genome shotgun sequence (592 bp)
Overview 1 RT 1: 71-509 bp Neighborhood of RT #1 [71, 562] RVT-GII Feature: gene Location: 71-562 bp Ori: OSN80718.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MTYY01000056.1 Pseudomonas syringae pv. actinidiae strain NZ37 BV354_56, whole genome shotgun sequence (37780 bp)
Overview 1 RT 1: 105-7439 bp Neighborhood of RT #1 [105, 7447] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 105-335 bp Feature: gene Location: 1476-2111 bp Ori: OSN92929.1 Feature: domain Description: DUF2625 Location: 1488-2076 bp Feature: domain Description: DUF2625 Location: 1488-2076 bp Feature: gene Location: 2549-4384 bp Ori: OSN92930.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3 623 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: Intron_maturas2 Location: 3 719-403 4 bp Feature: domain Description: HNHc Note: nucleases Location: 4157-4322 bp Feature: domain Description: HNHc Note: nucleases Location: 4157-43 22 bp Feature: gene Location: 5215-6270 bp Ori: OSN92931.1 Feature: domain Description: Top1 Location: 5248-6262 bp Feature: domain Description: Top1 Location: 5248-6262 bp Feature: gene Location: 6359-7447 bp Ori: OSN92932.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6374-7439 bp Feature: domain Description: modC_ABC Location: 63 74-743 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: MTYY01000041.1 Pseudomonas syringae pv. actinidiae strain NZ37 BV354_41, whole genome shotgun sequence (47026 bp)
Overview 1 RT 1: 41912-45654 bp Neighborhood of RT #1 [41912, 46613] trans_reg_C ComA-like_MBL-fold RVT-Retrons Feature: gene Location: 41912-42235 bp Ori: OSN93711.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 41936-42146 bp Feature: domain Description: trans_reg_C Location: 4 1936-4 214 6 bp Feature: gene Location: 43042-44460 bp Ori: OSN93712.1 Feature: domain Description: ComA-like_MBL-fold Location: 43591-44077 bp Feature: domain Description: ComA-like_MBL-fold Location: 4 3591-4 4 077 bp Feature: gene Location: 44904-46613 bp Ori: OSN93713.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-45654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 5057-4 5654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons

Seq: MTYY01000186.1 Pseudomonas syringae pv. actinidiae strain NZ37 BV354_186, whole genome shotgun sequence (4951 bp)
Overview 1 RT 1: 1607-3879 bp Neighborhood of RT #1 [1607, 4631] UvrD_C RVT-UG9 Feature: gene Location: 1607-2551 bp Feature: gene Location: 2912-3502 bp Ori: OSN86172.1 Feature: domain Description: UvrD_C Location: 3236-3431 bp Feature: domain Description: UvrD_C Location: 3236-3431 bp Feature: gene Location: 3600-4631 bp Ori: OSN86173.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3603-3879 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3603-3879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9