myRT

myRT report for GCA_002111955.1_ASM211195v1

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Seq: MTYZ01000057.1 Pseudomonas syringae pv. actinidiae strain NZ38 BV355_57, whole genome shotgun sequence (37793 bp)
Overview 1 RT 1: 105-7439 bp Neighborhood of RT #1 [105, 7447] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 105-335 bp Feature: gene Location: 1476-2111 bp Ori: OSN98878.1 Feature: domain Description: DUF2625 Location: 1488-2076 bp Feature: domain Description: DUF2625 Location: 1 488-2076 bp Feature: gene Location: 2549-4384 bp Ori: OSN98879.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 0-3623 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: Intron_maturas2 Location: 371 9-4034 bp Feature: domain Description: HNHc Note: nucleases Location: 4157-4322 bp Feature: domain Description: HNHc Note: nucleases Location: 41 57-4322 bp Feature: gene Location: 5215-6270 bp Ori: OSN98880.1 Feature: domain Description: Top1 Location: 5248-6262 bp Feature: domain Description: Top1 Location: 5248-6262 bp Feature: gene Location: 6359-7447 bp Ori: OSN98881.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6374-7439 bp Feature: domain Description: modC_ABC Location: 6374-7439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: MTYZ01000187.1 Pseudomonas syringae pv. actinidiae strain NZ38 BV355_187, whole genome shotgun sequence (4952 bp)
Overview 1 RT 1: 1608-3880 bp Neighborhood of RT #1 [1608, 4632] UvrD_C RVT-UG9 Feature: gene Location: 1608-2552 bp Feature: gene Location: 2913-3503 bp Ori: OSN92810.1 Feature: domain Description: UvrD_C Location: 3237-3432 bp Feature: domain Description: UvrD_C Location: 32 37-3432 bp Feature: gene Location: 3601-4632 bp Ori: OSN92811.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3604-3880 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3604-3880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: MTYZ01000313.1 Pseudomonas syringae pv. actinidiae strain NZ38 BV355_313, whole genome shotgun sequence (593 bp)
Overview 1 RT 1: 71-512 bp Neighborhood of RT #1 [71, 553] RVT-GII Feature: gene Location: 71-553 bp Ori: OSN87896.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MTYZ01000039.1 Pseudomonas syringae pv. actinidiae strain NZ38 BV355_39, whole genome shotgun sequence (48955 bp)
Overview 1 RT 1: 42198-48851 bp Neighborhood of RT #1 [42198, 48851] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 42198-42521 bp Ori: OSN99906.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 42222-42432 bp Feature: domain Description: trans_reg_C Location: 4 2222-4 24 32 bp Feature: gene Location: 43328-44746 bp Ori: OSN99907.1 Feature: domain Description: ComA-like_MBL-fold Location: 43877-44363 bp Feature: domain Description: ComA-like_MBL-fold Location: 4 3877-4 4 363 bp Feature: gene Location: 45190-46899 bp Ori: OSN99908.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45343-45940 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 534 3-4 594 0 bp Feature: gene Location: 47397-48620 bp Ori: OSN99909.1 Feature: domain Description: COG3666 Location: 47439-47880 bp Feature: domain Description: COG3666 Location: 4 74 39-4 7880 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48357-48579 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4 8357-4 8579 bp Feature: gene Location: 48621-48851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: MTYZ01000243.1 Pseudomonas syringae pv. actinidiae strain NZ38 BV355_243, whole genome shotgun sequence (1609 bp)
Overview 1 RT 1: 338-1499 bp Neighborhood of RT #1 [338, 1606] RVT-GII GIIM Feature: gene Location: 338-1606 bp Ori: OSN91054.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542-1199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 42-1199 bp Feature: domain Description: GIIM Note: maturase Location: 1277-1499 bp Feature: domain Description: GIIM Note: maturase Location: 1277-1499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)