myRT

myRT report for GCA_002111985.1_ASM211198v1

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Seq: MTZC01000207.1 Pseudomonas syringae pv. actinidiae strain NZ41 BV358_207, whole genome shotgun sequence (3435 bp)
Overview 1 RT 1: 385-3331 bp Neighborhood of RT #1 [385, 3331] RVT-Retrons Feature: gene Location: 385-2094 bp Ori: OSO08745.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 538-1135 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 538-1 1 35 bp Feature: gene Location: 3101-3331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: MTZC01000244.1 Pseudomonas syringae pv. actinidiae strain NZ41 BV358_244, whole genome shotgun sequence (1609 bp)
Overview 1 RT 1: 338-1499 bp Neighborhood of RT #1 [338, 1606] RVT-GII GIIM Feature: gene Location: 338-1606 bp Ori: OSO06716.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542-1199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542 -1199 bp Feature: domain Description: GIIM Note: maturase Location: 1277-1499 bp Feature: domain Description: GIIM Note: maturase Location: 12 77-1499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTZC01000316.1 Pseudomonas syringae pv. actinidiae strain NZ41 BV358_316, whole genome shotgun sequence (592 bp)
Overview 1 RT 1: 71-509 bp Neighborhood of RT #1 [71, 562] RVT-GII Feature: gene Location: 71-562 bp Ori: OSO04501.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MTZC01000191.1 Pseudomonas syringae pv. actinidiae strain NZ41 BV358_191, whole genome shotgun sequence (4952 bp)
Overview 1 RT 1: 1608-3880 bp Neighborhood of RT #1 [1608, 4632] UvrD_C RVT-UG9 Feature: gene Location: 1608-2552 bp Feature: gene Location: 2913-3503 bp Ori: OSO09139.1 Feature: domain Description: UvrD_C Location: 3237-3432 bp Feature: domain Description: UvrD_C Location: 3237-34 32 bp Feature: gene Location: 3601-4632 bp Ori: OSO09140.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3604-3880 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3604 -3880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: MTZC01000058.1 Pseudomonas syringae pv. actinidiae strain NZ41 BV358_58, whole genome shotgun sequence (37780 bp)
Overview 1 RT 1: 105-7439 bp Neighborhood of RT #1 [105, 7447] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 105-335 bp Feature: gene Location: 1476-2111 bp Ori: OSO15885.1 Feature: domain Description: DUF2625 Location: 1488-2076 bp Feature: domain Description: DUF2625 Location: 1488-2076 bp Feature: gene Location: 2549-4384 bp Ori: OSO15886.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: HNHc Note: nucleases Location: 4157-4322 bp Feature: domain Description: HNHc Note: nucleases Location: 415 7-4322 bp Feature: gene Location: 5215-6270 bp Ori: OSO15887.1 Feature: domain Description: Top1 Location: 5248-6262 bp Feature: domain Description: Top1 Location: 5 248-6262 bp Feature: gene Location: 6359-7447 bp Ori: OSO15888.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6374-7439 bp Feature: domain Description: modC_ABC Location: 6374-7439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)