myRT

myRT report for GCA_002111995.1_ASM211199v1

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Seq: MTZB01000236.1 Pseudomonas syringae pv. actinidiae strain NZ40 BV357_236, whole genome shotgun sequence (1760 bp)
Overview 1 RT 1: 489-1650 bp Neighborhood of RT #1 [489, 1757] RVT-GII GIIM Feature: gene Location: 489-1757 bp Ori: OSO01098.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693-1 350 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1650 bp Feature: domain Description: GIIM Note: maturase Location: 1 428-1 650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTZB01000059.1 Pseudomonas syringae pv. actinidiae strain NZ40 BV357_59, whole genome shotgun sequence (37793 bp)
Overview 1 RT 1: 105-7439 bp Neighborhood of RT #1 [105, 7447] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 105-335 bp Feature: gene Location: 1476-2111 bp Ori: OSO10084.1 Feature: domain Description: DUF2625 Location: 1488-2076 bp Feature: domain Description: DUF2 62 5 Location: 1488-2 076 bp Feature: gene Location: 2549-4384 bp Ori: OSO10085.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 810-362 3 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: HNHc Note: nucleases Location: 4157-4322 bp Feature: domain Description: HNHc Note: nucleases Location: 4157-432 2 bp Feature: gene Location: 5215-6270 bp Ori: OSO10086.1 Feature: domain Description: Top1 Location: 5248-6262 bp Feature: domain Description: Top1 Location: 52 48-62 62 bp Feature: gene Location: 6359-7447 bp Ori: OSO10087.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6374-7439 bp Feature: domain Description: modC_ABC Location: 6374-7439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: MTZB01000189.1 Pseudomonas syringae pv. actinidiae strain NZ40 BV357_189, whole genome shotgun sequence (4952 bp)
Overview 1 RT 1: 1608-3880 bp Neighborhood of RT #1 [1608, 4632] UvrD_C RVT-UG9 Feature: gene Location: 1608-2552 bp Feature: gene Location: 2913-3635 bp Ori: OSO03955.1 Feature: domain Description: UvrD_C Location: 3369-3564 bp Feature: domain Description: UvrD_C Location: 3 3 69-3 564 bp Feature: gene Location: 3601-4632 bp Ori: OSO03956.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3604-3880 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3 604-3 880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: MTZB01000315.1 Pseudomonas syringae pv. actinidiae strain NZ40 BV357_315, whole genome shotgun sequence (599 bp)
Overview 1 RT 1: 71-506 bp Neighborhood of RT #1 [71, 532] RVT-GII Feature: gene Location: 71-532 bp Ori: OSN98065.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MTZB01000038.1 Pseudomonas syringae pv. actinidiae strain NZ40 BV357_38, whole genome shotgun sequence (48955 bp)
Overview 1 RT 1: 42198-48851 bp Neighborhood of RT #1 [42198, 48851] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 42198-42521 bp Ori: OSO11270.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 42222-42432 bp Feature: domain Description: trans_reg_C Location: 42222-42432 bp Feature: gene Location: 43328-44746 bp Ori: OSO11271.1 Feature: domain Description: ComA-like_MBL-fold Location: 43877-44363 bp Feature: domain Description: ComA-like_MBL-fold Location: 43877-44363 bp Feature: gene Location: 45190-46899 bp Ori: OSO11272.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45343-45940 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45 343-45 940 bp Feature: gene Location: 47397-48620 bp Ori: OSO11273.1 Feature: domain Description: COG3666 Location: 47439-47880 bp Feature: domain Description: COG3666 Location: 47439-47880 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48357-48579 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4835 7-485 79 bp Feature: gene Location: 48621-48851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)