myRT

myRT report for GCA_002112005.1_ASM211200v1

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Seq: MTZD01000039.1 Pseudomonas syringae pv. actinidiae strain NZ42 BV359_39, whole genome shotgun sequence (48669 bp)
Overview 1 RT 1: 41912-48565 bp Neighborhood of RT #1 [41912, 48565] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 41912-42235 bp Ori: OSO22271.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 41936-42146 bp Feature: domain Description: trans_reg_C Location: 41 936-421 46 bp Feature: gene Location: 43042-44460 bp Ori: OSO22272.1 Feature: domain Description: ComA-like_MBL-fold Location: 43591-44077 bp Feature: domain Description: ComA-like_MBL-fold Location: 43591 -44077 bp Feature: gene Location: 44904-46613 bp Ori: OSO22273.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-45654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-45654 bp Feature: gene Location: 47111-48334 bp Ori: OSO22274.1 Feature: domain Description: COG3666 Location: 47153-47594 bp Feature: domain Description: COG3666 Location: 471 53-47594 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48071-48293 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 48071 -48293 bp Feature: gene Location: 48335-48565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: MTZD01000186.1 Pseudomonas syringae pv. actinidiae strain NZ42 BV359_186, whole genome shotgun sequence (4951 bp)
Overview 1 RT 1: 1607-3879 bp Neighborhood of RT #1 [1607, 4631] UvrD_C RVT-UG9 Feature: gene Location: 1607-2551 bp Feature: gene Location: 2912-3502 bp Ori: OSO14494.1 Feature: domain Description: UvrD_C Location: 3236-3431 bp Feature: domain Description: UvrD_C Location: 32 36-3431 bp Feature: gene Location: 3600-4631 bp Ori: OSO14495.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3603-3879 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3603-3879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: MTZD01000312.1 Pseudomonas syringae pv. actinidiae strain NZ42 BV359_312, whole genome shotgun sequence (599 bp)
Overview 1 RT 1: 71-506 bp Neighborhood of RT #1 [71, 532] RVT-GII Feature: gene Location: 71-532 bp Ori: OSO09594.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MTZD01000058.1 Pseudomonas syringae pv. actinidiae strain NZ42 BV359_58, whole genome shotgun sequence (37793 bp)
Overview 1 RT 1: 105-7439 bp Neighborhood of RT #1 [105, 7447] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 105-335 bp Feature: gene Location: 1476-2111 bp Ori: OSO21360.1 Feature: domain Description: DUF2625 Location: 1488-2076 bp Feature: domain Description: DUF2625 Location: 14 88-2076 bp Feature: gene Location: 2549-4384 bp Ori: OSO21361.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: Intron_maturas2 Location: 3719-4 034 bp Feature: domain Description: HNHc Note: nucleases Location: 4157-4322 bp Feature: domain Description: HNHc Note: nucleases Location: 4 157-4 322 bp Feature: gene Location: 5215-6270 bp Ori: OSO21362.1 Feature: domain Description: Top1 Location: 5248-6262 bp Feature: domain Description: Top1 Location: 524 8-6262 bp Feature: gene Location: 6359-7447 bp Ori: OSO21363.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6374-7439 bp Feature: domain Description: modC_ABC Location: 6374 -74 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: MTZD01000240.1 Pseudomonas syringae pv. actinidiae strain NZ42 BV359_240, whole genome shotgun sequence (1609 bp)
Overview 1 RT 1: 4-1165 bp Neighborhood of RT #1 [4, 1272] RVT-GII GIIM Feature: gene Location: 4-1272 bp Ori: OSO11935.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)