myRT

myRT report for GCA_002112095.1_ASM211209v1

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Seq: MTZH01000058.1 Pseudomonas syringae pv. actinidiae strain NZ48 BV364_58, whole genome shotgun sequence (37793 bp)
Overview 1 RT 1: 105-7439 bp Neighborhood of RT #1 [105, 7447] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 105-335 bp Feature: gene Location: 1476-2111 bp Ori: OSO44506.1 Feature: domain Description: DUF2625 Location: 1488-2076 bp Feature: domain Description: DUF2625 Location: 1 488-2076 bp Feature: gene Location: 2549-4384 bp Ori: OSO44507.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 0-3623 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: Intron_maturas2 Location: 371 9-4034 bp Feature: domain Description: HNHc Note: nucleases Location: 4157-4322 bp Feature: domain Description: HNHc Note: nucleases Location: 41 57-4322 bp Feature: gene Location: 5215-6270 bp Ori: OSO44508.1 Feature: domain Description: Top1 Location: 5248-6262 bp Feature: domain Description: Top1 Location: 5248-6262 bp Feature: gene Location: 6359-7447 bp Ori: OSO44509.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6374-7439 bp Feature: domain Description: modC_ABC Location: 6374-7439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: MTZH01000188.1 Pseudomonas syringae pv. actinidiae strain NZ48 BV364_188, whole genome shotgun sequence (4952 bp)
Overview 1 RT 1: 1608-3880 bp Neighborhood of RT #1 [1608, 4632] UvrD_C RVT-UG9 Feature: gene Location: 1608-2552 bp Feature: gene Location: 2913-3635 bp Ori: OSO36591.1 Feature: domain Description: UvrD_C Location: 3369-3564 bp Feature: domain Description: UvrD_C Location: 3369-3564 bp Feature: gene Location: 3601-4632 bp Ori: OSO36592.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3604-3880 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3604-3880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: MTZH01000243.1 Pseudomonas syringae pv. actinidiae strain NZ48 BV364_243, whole genome shotgun sequence (1609 bp)
Overview 1 RT 1: 338-1499 bp Neighborhood of RT #1 [338, 1606] RVT-GII GIIM Feature: gene Location: 338-1606 bp Ori: OSO34046.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542-1199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542-1199 bp Feature: domain Description: GIIM Note: maturase Location: 1277-1499 bp Feature: domain Description: GIIM Note: maturase Location: 1277-1499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTZH01000312.1 Pseudomonas syringae pv. actinidiae strain NZ48 BV364_312, whole genome shotgun sequence (599 bp)
Overview 1 RT 1: 71-506 bp Neighborhood of RT #1 [71, 532] RVT-GII Feature: gene Location: 71-532 bp Ori: OSO32440.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MTZH01000039.1 Pseudomonas syringae pv. actinidiae strain NZ48 BV364_39, whole genome shotgun sequence (48669 bp)
Overview 1 RT 1: 41912-48565 bp Neighborhood of RT #1 [41912, 48565] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 41912-42235 bp Ori: OSO45561.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 41936-42146 bp Feature: domain Description: trans_reg_C Location: 41936-42146 bp Feature: gene Location: 43042-44460 bp Ori: OSO45562.1 Feature: domain Description: ComA-like_MBL-fold Location: 43591-44077 bp Feature: domain Description: ComA-like_MBL-fold Location: 435 91-44077 bp Feature: gene Location: 44904-46613 bp Ori: OSO45563.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-45654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45 05 7-45 65 4 bp Feature: gene Location: 47111-48334 bp Ori: OSO45564.1 Feature: domain Description: COG3666 Location: 47153-47594 bp Feature: domain Description: COG3666 Location: 4715 3-475 94 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48071-48293 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48071-48293 bp Feature: gene Location: 48335-48565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)