myRT

myRT report for GCA_002112125.1_ASM211212v1

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Seq: MTZI01000061.1 Pseudomonas syringae pv. actinidiae strain NZ47 BV363_61, whole genome shotgun sequence (37793 bp)
Overview 1 RT 1: 105-7439 bp Neighborhood of RT #1 [105, 7447] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 105-335 bp Feature: gene Location: 1476-2111 bp Ori: OSO50523.1 Feature: domain Description: DUF2625 Location: 1488-2076 bp Feature: domain Description: DUF2625 Location: 1 488-2076 bp Feature: gene Location: 2549-4384 bp Ori: OSO50524.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 0-3623 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: Intron_maturas2 Location: 371 9-4034 bp Feature: domain Description: HNHc Note: nucleases Location: 4157-4322 bp Feature: domain Description: HNHc Note: nucleases Location: 41 57-4322 bp Feature: gene Location: 5215-6270 bp Ori: OSO50525.1 Feature: domain Description: Top1 Location: 5248-6262 bp Feature: domain Description: Top1 Location: 5248-6262 bp Feature: gene Location: 6359-7447 bp Ori: OSO50526.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6374-7439 bp Feature: domain Description: modC_ABC Location: 6374-7439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: MTZI01000246.1 Pseudomonas syringae pv. actinidiae strain NZ47 BV363_246, whole genome shotgun sequence (1634 bp)
Overview 1 RT 1: 338-1499 bp Neighborhood of RT #1 [338, 1606] RVT-GII GIIM Feature: gene Location: 338-1606 bp Ori: OSO41022.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542-1199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542 -1199 bp Feature: domain Description: GIIM Note: maturase Location: 1277-1499 bp Feature: domain Description: GIIM Note: maturase Location: 12 77-1499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTZI01000043.1 Pseudomonas syringae pv. actinidiae strain NZ47 BV363_43, whole genome shotgun sequence (48669 bp)
Overview 1 RT 1: 41912-48565 bp Neighborhood of RT #1 [41912, 48565] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 41912-42235 bp Ori: OSO51521.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 41936-42146 bp Feature: domain Description: trans_reg_C Location: 4193 6-42146 bp Feature: gene Location: 43042-44460 bp Ori: OSO51522.1 Feature: domain Description: ComA-like_MBL-fold Location: 43591-44077 bp Feature: domain Description: ComA-like_MBL-fold Location: 43 591-44077 bp Feature: gene Location: 44904-46613 bp Ori: OSO51523.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-45654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-45654 bp Feature: gene Location: 47111-48334 bp Ori: OSO51524.1 Feature: domain Description: COG3666 Location: 47153-47594 bp Feature: domain Description: COG3 666 Location: 47153 -47594 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48071-48293 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48071-48293 bp Feature: gene Location: 48335-48565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: MTZI01000192.1 Pseudomonas syringae pv. actinidiae strain NZ47 BV363_192, whole genome shotgun sequence (4951 bp)
Overview 1 RT 1: 1607-3879 bp Neighborhood of RT #1 [1607, 4631] UvrD_C RVT-UG9 Feature: gene Location: 1607-2551 bp Feature: gene Location: 2912-3502 bp Ori: OSO44503.1 Feature: domain Description: UvrD_C Location: 3236-3431 bp Feature: domain Description: UvrD_C Location: 3236-34 31 bp Feature: gene Location: 3600-4631 bp Ori: OSO44504.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3603-3879 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3603-3879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9