myRT

myRT report for GCA_002112165.1_ASM211216v1

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Seq: MTZL01000191.1 Pseudomonas syringae pv. actinidiae strain NZ59 BV367_191, whole genome shotgun sequence (4979 bp)
Overview 1 RT 1: 1607-3879 bp Neighborhood of RT #1 [1607, 4631] UvrD_C RVT-UG9 Feature: gene Location: 1607-2551 bp Feature: gene Location: 2912-3502 bp Ori: OSO61713.1 Feature: domain Description: UvrD_C Location: 3236-3431 bp Feature: domain Description: UvrD_C Location: 3236-3431 bp Feature: gene Location: 3600-4631 bp Ori: OSO61714.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3603-3879 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3603-3879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: MTZL01000300.1 Pseudomonas syringae pv. actinidiae strain NZ59 BV367_301, whole genome shotgun sequence (598 bp)
Overview 1 RT 1: 71-509 bp Neighborhood of RT #1 [71, 568] RVT-GII Feature: gene Location: 71-568 bp Ori: OSO56622.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MTZL01000233.1 Pseudomonas syringae pv. actinidiae strain NZ59 BV367_233, whole genome shotgun sequence (1760 bp)
Overview 1 RT 1: 489-1650 bp Neighborhood of RT #1 [489, 1757] RVT-GII GIIM Feature: gene Location: 489-1757 bp Ori: OSO59276.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693 -13 50 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1650 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MTZL01000061.1 Pseudomonas syringae pv. actinidiae strain NZ59 BV367_61, whole genome shotgun sequence (37793 bp)
Overview 1 RT 1: 105-7439 bp Neighborhood of RT #1 [105, 7447] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 105-335 bp Feature: gene Location: 1476-2111 bp Ori: OSO67469.1 Feature: domain Description: DUF2625 Location: 1488-2076 bp Feature: domain Description: DUF2625 Location: 14 88-2076 bp Feature: gene Location: 2549-4384 bp Ori: OSO67470.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2810-3623 bp Feature: domain Description: Intron_maturas2 Location: 3719-4034 bp Feature: domain Description: Intron_maturas2 Location: 3719-4 034 bp Feature: domain Description: HNHc Note: nucleases Location: 4157-4322 bp Feature: domain Description: HNHc Note: nucleases Location: 4 157-4 322 bp Feature: gene Location: 5215-6270 bp Ori: OSO67471.1 Feature: domain Description: Top1 Location: 5248-6262 bp Feature: domain Description: Top1 Location: 524 8-6262 bp Feature: gene Location: 6359-7447 bp Ori: OSO67472.1 Gene: cysA_1 Feature: domain Description: modC_ABC Location: 6374-7439 bp Feature: domain Description: modC_ABC Location: 6374 -74 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: MTZL01000041.1 Pseudomonas syringae pv. actinidiae strain NZ59 BV367_41, whole genome shotgun sequence (48955 bp)
Overview 1 RT 1: 42198-48851 bp Neighborhood of RT #1 [42198, 48851] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 42198-42521 bp Ori: OSO68282.1 Gene: ctrA Feature: domain Description: trans_reg_C Location: 42222-42432 bp Feature: domain Description: trans_reg_C Location: 42222-42432 bp Feature: gene Location: 43328-44746 bp Ori: OSO68283.1 Feature: domain Description: ComA-like_MBL-fold Location: 43877-44363 bp Feature: domain Description: ComA-like_MBL-fold Location: 43877-44363 bp Feature: gene Location: 45190-46899 bp Ori: OSO68284.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45343-45940 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45 343-45 940 bp Feature: gene Location: 47397-48620 bp Ori: OSO68285.1 Feature: domain Description: COG3666 Location: 47439-47880 bp Feature: domain Description: COG3666 Location: 47439-47880 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48357-48579 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4835 7-485 79 bp Feature: gene Location: 48621-48851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)