myRT

myRT report for GCA_002116485.1_ASM211648v1

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Seq: NEFP01000137.1 Escherichia coli strain AUH_IMP153 NODE_137_length_4787_cov_4.2367_ID_21422, whole genome shotgun sequence (4787 bp)
Overview 1 RT 1: 885-4211 bp Neighborhood of RT #1 [885, 4211] FRG RVT-Retrons HTH_XRE Feature: gene Location: 885-1034 bp Feature: gene Location: 1073-2437 bp Feature: domain Description: FRG Location: 1640-1925 bp Feature: domain Description: FRG Location: 1 640-1 925 bp Feature: gene Location: 2546-3496 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2726-3269 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2726-3269 bp Feature: gene Location: 3462-3794 bp Feature: domain Description: HTH_XRE Location: 3489-3648 bp Feature: domain Description: HTH_XRE Location: 3489-3648 bp Feature: gene Location: 3819-4211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530)

Seq: NEFP01000179.1 Escherichia coli strain AUH_IMP153 NODE_179_length_2272_cov_20.7058_ID_21506, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NEFP01000035.1 Escherichia coli strain AUH_IMP153 NODE_35_length_50540_cov_8.3144_ID_21218, whole genome shotgun sequence (50540 bp)
Overview 1 RT 1: 41041-47072 bp Neighborhood of RT #1 [41041, 47072] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 41041-41961 bp Feature: domain Description: AbiEii Location: 41083-41824 bp Feature: domain Description: AbiEii Location: 41083 -41824 bp Feature: gene Location: 41948-42751 bp Feature: domain Description: AbiEi_3_N Location: 41981-42242 bp Feature: domain Description: AbiEi_3 _N Location: 41981-42242 bp Feature: domain Description: AbiEi_3 Location: 42254-42710 bp Feature: domain Description: AbiEi_3 Location: 42254-42710 bp Feature: gene Location: 43046-46255 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 43574-44063 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 43 574-44063 bp Feature: domain Description: nitrilase Location: 45569-46166 bp Feature: domain Description: nitrilase Location: 45569-46166 bp Feature: gene Location: 46416-46556 bp Feature: domain Description: Phage_ASH Location: 46443-46536 bp Feature: domain Description: Phage_ASH Location: 46443 -4653 6 bp Feature: gene Location: 46602-47072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: NEFP01000052.1 Escherichia coli strain AUH_IMP153 NODE_52_length_35981_cov_8.64166_ID_21252, whole genome shotgun sequence (35981 bp)
Overview 1 RT 1: 5684-9975 bp Neighborhood of RT #1 [5684, 9975] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 5684-6946 bp Feature: domain Description: YesM Location: 6197-6938 bp Feature: domain Description: YesM Location: 6197-6938 bp Feature: gene Location: 6976-7146 bp Feature: gene Location: 7496-8017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7502-7784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7502-7784 bp Feature: domain Description: GIIM Note: maturase Location: 7832-8012 bp Feature: domain Description: GIIM Note: maturase Location: 7832-8012 bp Feature: gene Location: 8045-8584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8375-8453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8375-84 53 bp Feature: gene Location: 8615-8812 bp Feature: gene Location: 9070-9975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)