myRT

myRT report for GCA_002116495.1_ASM211649v1

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Seq: NEFQ01000116.1 Escherichia coli strain AUH_IMP157 NODE_116_length_11455_cov_15.285_ID_15542, whole genome shotgun sequence (11455 bp)
Overview 1 RT 1: 3-1077 bp Neighborhood of RT #1 [3, 1085] RVT-GII PRK10173 PRK10173 Feature: gene Location: 3-302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-1 41 bp Feature: gene Location: 341-652 bp Feature: domain Description: PRK10173 Location: 344-563 bp Feature: domain Description: PRK1 01 73 Location: 344-563 bp Feature: gene Location: 636-1085 bp Feature: domain Description: PRK10173 Location: 639-1077 bp Feature: domain Description: PRK1 01 73 Location: 639-1 077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: NEFQ01000189.1 Escherichia coli strain AUH_IMP157 NODE_188_length_2849_cov_17.896_ID_15686, whole genome shotgun sequence (2849 bp)
Overview 1 RT 1: 3-2190 bp Neighborhood of RT #1 [3, 2228] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 3-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 -804 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: gene Location: 1499-1795 bp Feature: domain Description: PHA02517 Location: 1502-1751 bp Feature: domain Description: PHA02 517 Location: 1502 -1751 bp Feature: gene Location: 1824-2228 bp Feature: domain Description: InsE Location: 1854-2190 bp Feature: domain Description: InsE Location: 1854-2 190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: NEFQ01000195.1 Escherichia coli strain AUH_IMP157 NODE_194_length_2663_cov_30.8233_ID_15702, whole genome shotgun sequence (2663 bp)
Overview 1 RT 1: 270-2420 bp Neighborhood of RT #1 [270, 2515] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 270-479 bp Feature: gene Location: 614-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1712 bp Feature: domain Description: Intron_maturas2 Location: 1826-2084 bp Feature: domain Description: Intron_maturas2 Location: 1826-2084 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-2420 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-2420 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NEFQ01000001.1 Escherichia coli strain AUH_IMP157 NODE_1_length_156362_cov_6.33977_ID_15312, whole genome shotgun sequence (156362 bp)
Overview 1 RT 1: 22255-28498 bp Neighborhood of RT #1 [22255, 28635] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22255-22521 bp Feature: domain Description: Phage_integrase Location: 22321-22417 bp Feature: domain Description: Phage_integrase Location: 22321-224 17 bp Feature: gene Location: 22604-23074 bp Feature: gene Location: 23421-26630 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23949-24438 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2394 9-24 4 38 bp Feature: domain Description: nitrilase Location: 25944-26541 bp Feature: domain Description: nitrilase Location: 2594 4 -2654 1 bp Feature: gene Location: 26925-27728 bp Feature: domain Description: AbiEi_3_N Location: 26958-27219 bp Feature: domain Description: AbiEi_3_N Location: 26958-27219 bp Feature: domain Description: AbiEi_3 Location: 27231-27687 bp Feature: domain Description: AbiEi_3 Location: 27231-27687 bp Feature: gene Location: 27715-28635 bp Feature: domain Description: AbiEii Location: 27757-28498 bp Feature: domain Description: AbiEii Location: 27757-284 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: NEFQ01000203.1 Escherichia coli strain AUH_IMP157 NODE_202_length_2414_cov_3.13774_ID_15718, whole genome shotgun sequence (2414 bp)
Overview 1 RT 1: 381-2186 bp Neighborhood of RT #1 [381, 2413] FRG RVT-Retrons Feature: gene Location: 381-530 bp Feature: gene Location: 569-1933 bp Feature: domain Description: FRG Location: 1136-1421 bp Feature: domain Description: FRG Location: 1136-1421 bp Feature: gene Location: 2042-2413 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2048-2186 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2048-2186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FRG (smart00901), RVT-Retrons

Seq: NEFQ01000213.1 Escherichia coli strain AUH_IMP157 NODE_212_length_1956_cov_4.3275_ID_15738, whole genome shotgun sequence (1956 bp)
Overview 1 RT 1: 713-1953 bp Neighborhood of RT #1 [713, 1955] HTH_XRE RVT-Retrons Feature: gene Location: 713-1105 bp Feature: gene Location: 1142-1462 bp Feature: domain Description: HTH_XRE Location: 1157-1316 bp Feature: domain Description: HTH_XRE Location: 1157-1316 bp Feature: gene Location: 1428-1955 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1608-1953 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16 08-1953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: NEFQ01000223.1 Escherichia coli strain AUH_IMP157 NODE_222_length_1678_cov_33.9207_ID_15756, whole genome shotgun sequence (1678 bp)
Overview 1 RT 1: 1-1677 bp Neighborhood of RT #1 [1, 1676] InsE PHA02517 RVT-GII Feature: gene Location: 1-279 bp Feature: domain Description: InsE Location: 10-277 bp Feature: domain Description: InsE Location: 10-27 7 bp Feature: gene Location: 279-758 bp Feature: domain Description: PHA02517 Location: 339-693 bp Feature: domain Description: PHA02517 Location: 339-693 bp Feature: gene Location: 1350-1676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623-1677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623-167 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: NEFQ01000064.1 Escherichia coli strain AUH_IMP157 NODE_64_length_29910_cov_6.26975_ID_15438, whole genome shotgun sequence (29910 bp)
Overview 1 RT 1: 5684-9975 bp Neighborhood of RT #1 [5684, 9975] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 5684-6946 bp Feature: domain Description: YesM Location: 6197-6938 bp Feature: domain Description: YesM Location: 6197-6938 bp Feature: gene Location: 6976-7146 bp Feature: gene Location: 7496-8017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7502-7784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7502-778 4 bp Feature: domain Description: GIIM Note: maturase Location: 7832-8012 bp Feature: domain Description: GIIM Note: maturase Location: 78 32-8 012 bp Feature: gene Location: 8045-8584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8375-8453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 375-8 453 bp Feature: gene Location: 8615-8812 bp Feature: gene Location: 9070-9975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)