myRT

myRT report for GCA_002116545.1_ASM211654v1

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Seq: NEFO01000104.1 Escherichia coli strain AUH_IMP149 NODE_104_length_6994_cov_14.9125_ID_16842, whole genome shotgun sequence (6864 bp)
Overview 1 RT 1: 1622-4290 bp Neighborhood of RT #1 [1622, 4290] ParE_toxin RVT-GII Feature: gene Location: 1622-1789 bp Feature: gene Location: 1915-2118 bp Feature: domain Description: ParE_toxin Location: 1930-2113 bp Feature: domain Description: ParE_toxin Location: 1 930-21 1 3 bp Feature: gene Location: 2369-3784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2654-3341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2654-3341 bp Feature: gene Location: 3795-4067 bp Feature: gene Location: 4117-4290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE_toxin (pfam05016), RVT-GII

Seq: NEFO01000106.1 Escherichia coli strain AUH_IMP149 NODE_106_length_6800_cov_8.29957_ID_16846, whole genome shotgun sequence (6800 bp)
Overview 1 RT 1: 2-1603 bp Neighborhood of RT #1 [2, 1603] RVT-GII RVT-GII GIIM Feature: gene Location: 2-478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269-347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 69-347 bp Feature: gene Location: 506-1027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512 -794 bp Feature: domain Description: GIIM Note: maturase Location: 842-1022 bp Feature: domain Description: GIIM Note: maturase Location: 842 -102 2 bp Feature: gene Location: 1126-1305 bp Feature: gene Location: 1415-1603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NEFO01000034.1 Escherichia coli strain AUH_IMP149 NODE_34_length_47467_cov_9.88274_ID_16702, whole genome shotgun sequence (47467 bp)
Overview 1 RT 1: 9612-13494 bp Neighborhood of RT #1 [9612, 13499] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9612-10070 bp Feature: domain Description: dut Location: 9618-10065 bp Feature: domain Description: dut Location: 9618-10065 bp Feature: gene Location: 10177-10773 bp Feature: domain Description: slmA Location: 10183-10759 bp Feature: domain Description: slmA Location: 10183 -10759 bp Feature: gene Location: 10819-11778 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10954-11503 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10954-11503 bp Feature: gene Location: 12076-12732 bp Feature: domain Description: pyrE Location: 12094-12727 bp Feature: domain Description: pyrE Location: 12094-12727 bp Feature: gene Location: 12783-13499 bp Feature: domain Description: rph Location: 12786-13494 bp Feature: domain Description: rph Location: 12786-13 494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NEFO01000096.1 Escherichia coli strain AUH_IMP149 NODE_96_length_9921_cov_9.85215_ID_16826, whole genome shotgun sequence (9921 bp)
Overview 1 RT 1: 7982-9882 bp Neighborhood of RT #1 [7982, 9920] Asparaginase_2 RVT-GII Feature: gene Location: 7982-9013 bp Feature: domain Description: Asparaginase_2 Location: 8072-9005 bp Feature: domain Description: Asparaginase_2 Location: 8072-9005 bp Feature: gene Location: 9340-9489 bp Feature: gene Location: 9537-9920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9780-9882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9780-9882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII