myRT

myRT report for GCA_002116555.1_ASM211655v1

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Seq: NEFR01000010.1 Escherichia coli strain AUH_IMP161 NODE_10_length_118860_cov_9.39664_ID_15032, whole genome shotgun sequence (118860 bp)
Overview 1 RT 1: 103069-109156 bp Neighborhood of RT #1 [103069, 109156] Psu PRK09678 RVT-UG8 RVT-UG3 PRK09692 Feature: gene Location: 103069-103623 bp Feature: domain Description: Psu Location: 103093-103603 bp Feature: domain Description: Psu Location: 1 03093-1 03603 bp Feature: gene Location: 103625-103897 bp Feature: domain Description: PRK09678 Location: 103634-103802 bp Feature: domain Description: PRK09678 Location: 1 03634-1 03802 bp Feature: gene Location: 104346-106349 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 104841-105288 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 04841 -1 05288 bp Feature: gene Location: 106353-107549 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 106638-107100 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 06638-1 071 00 bp Feature: gene Location: 107551-108729 bp Feature: domain Description: PRK09692 Location: 107557-108715 bp Feature: domain Description: PRK09692 Location: 1 07557-1 0871 5 bp Feature: gene Location: 109004-109156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG8, RVT-UG3, PRK09692 (Integrase; provisional)

Seq: NEFR01000043.1 Escherichia coli strain AUH_IMP161 NODE_43_length_37692_cov_10.0569_ID_15098, whole genome shotgun sequence (37692 bp)
Overview 1 RT 1: 22376-26405 bp 2 RT 2: 32933-37266 bp Neighborhood of RT #1 [22376, 26440] InsE PHA02517 RVT-GII GIIM PHA02517 TagG Neighborhood of RT #2 [32933, 37334] gnd YhhI YhhI YhhI RVT-GII GIIM RVT-GII Feature: gene Location: 22376-22702 bp Feature: domain Description: InsE Location: 22379-22700 bp Feature: domain Description: InsE Location: 2 2 379-2 2 700 bp Feature: gene Location: 22702-23181 bp Feature: domain Description: PHA02517 Location: 22762-23116 bp Feature: domain Description: PHA02 517 Location: 2 2 762 -2 3116 bp Feature: gene Location: 23773-25296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24046-24778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4046-2 4778 bp Feature: domain Description: GIIM Note: maturase Location: 24853-25051 bp Feature: domain Description: GIIM Note: maturase Location: 2 4853-2 5051 bp Feature: gene Location: 25473-25859 bp Feature: domain Description: PHA02517 Location: 25476-25857 bp Feature: domain Description: PHA02 517 Location: 2 5476-2 5857 bp Feature: gene Location: 25862-26440 bp Feature: domain Description: TagG Location: 25877-26405 bp Feature: domain Description: TagG Location: 2 5877-2 6405 bp Feature: gene Location: 32933-34339 bp Feature: domain Description: gnd Location: 32948-34337 bp Feature: domain Description: gnd Location: 32 948-34337 bp Feature: gene Location: 34493-35629 bp Feature: domain Description: YhhI Location: 34496-34859 bp Feature: domain Description: YhhI Location: 34496-34859 bp Feature: domain Description: YhhI Location: 34916-35270 bp Feature: domain Description: YhhI Location: 34916-352 70 bp Feature: domain Description: YhhI Location: 35306-35549 bp Feature: domain Description: YhhI Location: 35306-35549 bp Feature: gene Location: 35836-36465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35842-36076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35842 -36076 bp Feature: domain Description: GIIM Note: maturase Location: 36166-36373 bp Feature: domain Description: GIIM Note: maturase Location: 36166-36373 bp Feature: gene Location: 36447-37334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36900-37266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36900-372 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), TagG (COG1682), gnd (TIGR00873), YhhI (COG5433)

Seq: NEFR01000047.1 Escherichia coli strain AUH_IMP161 NODE_47_length_34126_cov_17.401_ID_15106, whole genome shotgun sequence (34126 bp)
Overview 1 RT 1: 26682-30653 bp Neighborhood of RT #1 [26682, 30658] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 26682-27017 bp Feature: gene Location: 27470-27679 bp Feature: gene Location: 27814-29715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28081-28912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28081-28912 bp Feature: domain Description: Intron_maturas2 Location: 29026-29284 bp Feature: domain Description: Intron_maturas2 Location: 29026-29284 bp Feature: domain Description: HNHc Note: nucleases Location: 29458-29620 bp Feature: domain Description: HNHc Note: nucleases Location: 29458-29620 bp Feature: gene Location: 29910-30362 bp Feature: domain Description: PRK13732 Location: 29916-30360 bp Feature: domain Description: PRK13 73 2 Location: 29916-3 03 60 bp Feature: gene Location: 30425-30658 bp Feature: domain Description: DUF905 Location: 30455-30653 bp Feature: domain Description: DUF905 Location: 3 0455-3 0653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)