myRT

myRT report for GCA_002116565.1_ASM211656v1

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Seq: NEFT01000119.1 Escherichia coli strain AUH_IMP173 NODE_119_length_11765_cov_16.8422_ID_23447, whole genome shotgun sequence (11765 bp)
Overview 1 RT 1: 3-1077 bp Neighborhood of RT #1 [3, 1085] RVT-GII PRK10173 PRK10173 Feature: gene Location: 3-302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-1 41 bp Feature: gene Location: 341-652 bp Feature: domain Description: PRK10173 Location: 344-563 bp Feature: domain Description: PRK1 01 73 Location: 344-563 bp Feature: gene Location: 636-1085 bp Feature: domain Description: PRK10173 Location: 639-1077 bp Feature: domain Description: PRK1 01 73 Location: 639-1 077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: NEFT01000141.1 Escherichia coli strain AUH_IMP173 NODE_141_length_6407_cov_6.86099_ID_23491, whole genome shotgun sequence (6407 bp)
Overview 1 RT 1: 2369-5695 bp Neighborhood of RT #1 [2369, 5695] FRG RVT-Retrons HTH_XRE Feature: gene Location: 2369-2518 bp Feature: gene Location: 2557-3921 bp Feature: domain Description: FRG Location: 3124-3409 bp Feature: domain Description: FRG Location: 312 4-3409 bp Feature: gene Location: 4030-4980 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4210-4753 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42 10-4753 bp Feature: gene Location: 4946-5278 bp Feature: domain Description: HTH_XRE Location: 4973-5132 bp Feature: domain Description: HTH_XRE Location: 4973-5132 bp Feature: gene Location: 5303-5695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530)

Seq: NEFT01000015.1 Escherichia coli strain AUH_IMP173 NODE_15_length_76196_cov_9.2023_ID_23239, whole genome shotgun sequence (76196 bp)
Overview 1 RT 1: 28866-35109 bp Neighborhood of RT #1 [28866, 35246] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 28866-29132 bp Feature: domain Description: Phage_integrase Location: 28932-29028 bp Feature: domain Description: Phage_integrase Location: 2893 2-29028 bp Feature: gene Location: 29215-29685 bp Feature: gene Location: 30032-33241 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30560-31049 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 0560-3 1049 bp Feature: domain Description: nitrilase Location: 32555-33152 bp Feature: domain Description: nitrilase Location: 3 2555-3 3 152 bp Feature: gene Location: 33536-34339 bp Feature: domain Description: AbiEi_3_N Location: 33569-33830 bp Feature: domain Description: AbiEi_3 _N Location: 3 3 569-3 3 83 0 bp Feature: domain Description: AbiEi_3 Location: 33842-34298 bp Feature: domain Description: AbiEi_3 Location: 3 3 842-3 4298 bp Feature: gene Location: 34326-35246 bp Feature: domain Description: AbiEii Location: 34368-35109 bp Feature: domain Description: AbiEii Location: 3 43 68-3 5109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: NEFT01000173.1 Escherichia coli strain AUH_IMP173 NODE_173_length_2849_cov_21.468_ID_23555, whole genome shotgun sequence (2849 bp)
Overview 1 RT 1: 3-2190 bp Neighborhood of RT #1 [3, 2228] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 3-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: gene Location: 1499-1795 bp Feature: domain Description: PHA02517 Location: 1502-1751 bp Feature: domain Description: PHA02517 Location: 1502-1751 bp Feature: gene Location: 1824-2228 bp Feature: domain Description: InsE Location: 1854-2190 bp Feature: domain Description: InsE Location: 1854 -2190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: NEFT01000177.1 Escherichia coli strain AUH_IMP173 NODE_177_length_2663_cov_42.8864_ID_23563, whole genome shotgun sequence (2663 bp)
Overview 1 RT 1: 149-1955 bp Neighborhood of RT #1 [149, 2050] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 149-2050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1247 bp Feature: domain Description: Intron_maturas2 Location: 1361-1619 bp Feature: domain Description: Intron_maturas2 Location: 1361-1619 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-1955 bp Feature: domain Description: HNHc Note: nucleases Location: 1793-195 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NEFT01000191.1 Escherichia coli strain AUH_IMP173 NODE_191_length_1678_cov_38.7969_ID_23591, whole genome shotgun sequence (1678 bp)
Overview 1 RT 1: 3-1673 bp Neighborhood of RT #1 [3, 1675] RVT-GII InsE Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276 -330 bp Feature: gene Location: 960-1178 bp Feature: gene Location: 1400-1675 bp Feature: domain Description: InsE Location: 1442-1673 bp Feature: domain Description: InsE Location: 1442-16 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963)

Seq: NEFT01000099.1 Escherichia coli strain AUH_IMP173 NODE_99_length_17997_cov_10.4267_ID_23407, whole genome shotgun sequence (17997 bp)
Overview 1 RT 1: 5684-9975 bp Neighborhood of RT #1 [5684, 9975] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 5684-6946 bp Feature: domain Description: YesM Location: 6197-6938 bp Feature: domain Description: YesM Location: 6197 -6938 bp Feature: gene Location: 6976-7146 bp Feature: gene Location: 7496-8017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7502-7784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 502-7 7 84 bp Feature: domain Description: GIIM Note: maturase Location: 7832-8012 bp Feature: domain Description: GIIM Note: maturase Location: 7 832-8012 bp Feature: gene Location: 8045-8584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8375-8453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 837 5-8453 bp Feature: gene Location: 8615-8812 bp Feature: gene Location: 9070-9975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)