myRT

myRT report for GCA_002117975.1_ASM211797v1

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Seq: BDQG01000001.1 Geobacter pelophilus DNA, scaffold: scf_GPEL0_01, strain: Drf2, whole genome shotgun sequence (4176986 bp)
Overview 1 RT 1: 1314049-1322637 bp 2 RT 2: 1964473-1970579 bp 3 RT 3: 2438000-2445424 bp 4 RT 4: 2825098-2834239 bp Neighborhood of RT #1 [1314049, 1322637] PDC1_DGC_like Cache_2 PRK11360 sensory_box PRK13557 PRK13557 CvfB RVT-GII GIIM BI-1-like_bacterial Neighborhood of RT #2 [1964473, 1970596] ABC_cobalt_CbiO_domain1 ABC_cobalt_CbiO_domain1 TupB RVT-GII GIIM SpoU Neighborhood of RT #3 [2438000, 2445444] LptD LptD FolC RVT-GII GIIM PRK05654 trpA Neighborhood of RT #4 [2825098, 2834253] M48A_Zmpste24p_like GT5_Glycogen_synthase_DULL1-like RVT-GII GIIM OVP1 LarA Feature: gene Location: 1314049-1317807 bp Feature: domain Description: PDC1_DGC_like Location: 1314226-1314568 bp Feature: domain Description: PDC1 _DGC_like Location: 1 31 4226-1 31 4568 bp Feature: domain Description: Cache_2 Location: 1314574-1314673 bp Feature: domain Description: Cache_2 Location: 1 31 4574-1 31 4673 bp Feature: domain Description: PRK11360 Location: 1314817-1315510 bp Feature: domain Description: PRK1 1 360 Location: 1 31 481 7-1 31 551 0 bp Feature: domain Description: sensory_box Location: 1315519-1315912 bp Feature: domain Description: sensory_box Location: 1 31 551 9-1 31 591 2 bp Feature: domain Description: PRK13557 Location: 1315996-1316311 bp Feature: domain Description: PRK1 3557 Location: 1 31 5996-1 31 631 1 bp Feature: domain Description: PRK13557 Location: 1316356-1317802 bp Feature: domain Description: PRK1 3557 Location: 1 31 6356-1 31 7802 bp Feature: gene Location: 1318105-1318998 bp Feature: domain Description: CvfB Location: 1318177-1318993 bp Feature: domain Description: CvfB Location: 1 31 81 77-1 31 8993 bp Feature: gene Location: 1319842-1321290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1320226-1320841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 320226-1 320841 bp Feature: domain Description: GIIM Note: maturase Location: 1320895-1321114 bp Feature: domain Description: GIIM Note: maturase Location: 1 320895-1 321 1 1 4 bp Feature: gene Location: 1321377-1322099 bp Feature: domain Description: BI-1-like_bacterial Location: 1321476-1322088 bp Feature: domain Description: BI-1 -like_bacterial Location: 1 321 476-1 322088 bp Feature: gene Location: 1322302-1322637 bp Feature: gene Location: 1964473-1965831 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 1964482-1965091 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 1 964482-1 965091 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 1965217-1965811 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 1 96521 7-1 96581 1 bp Feature: gene Location: 1965880-1966734 bp Feature: domain Description: TupB Location: 1965895-1966702 bp Feature: domain Description: TupB Location: 1 965895-1 966702 bp Feature: gene Location: 1966895-1968343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1967279-1967894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 967279-1 967894 bp Feature: domain Description: GIIM Note: maturase Location: 1967948-1968167 bp Feature: domain Description: GIIM Note: maturase Location: 1 967948-1 9681 67 bp Feature: gene Location: 1968862-1969353 bp Feature: gene Location: 1969847-1970596 bp Feature: domain Description: SpoU Location: 1969856-1970579 bp Feature: domain Description: SpoU Location: 1 969856-1 970579 bp Feature: gene Location: 2438000-2440054 bp Feature: domain Description: LptD Location: 2438057-2439200 bp Feature: domain Description: LptD Location: 2438057-2439200 bp Feature: domain Description: LptD Location: 2439656-2440022 bp Feature: domain Description: LptD Location: 2439656-2440022 bp Feature: gene Location: 2440128-2441402 bp Feature: domain Description: FolC Location: 2440140-2441373 bp Feature: domain Description: FolC Location: 24401 40-2441 373 bp Feature: gene Location: 2441722-2443170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2442106-2442721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24421 06-2442721 bp Feature: domain Description: GIIM Note: maturase Location: 2442775-2442994 bp Feature: domain Description: GIIM Note: maturase Location: 2442775-2442994 bp Feature: gene Location: 2443656-2444450 bp Feature: domain Description: PRK05654 Location: 2443662-2444442 bp Feature: domain Description: PRK05654 Location: 2443662-2444442 bp Feature: gene Location: 2444638-2445444 bp Feature: domain Description: trpA Location: 2444659-2445424 bp Feature: domain Description: trpA Location: 2444659-2445424 bp Feature: gene Location: 2825098-2826420 bp Feature: domain Description: M48A_Zmpste24p_like Location: 2825173-2826385 bp Feature: domain Description: M48A_Zmpste24p_like Location: 28251 73-2826385 bp Feature: gene Location: 2826505-2828067 bp Feature: domain Description: GT5_Glycogen_synthase_DULL1-like Location: 2826517-2827951 bp Feature: domain Description: GT5_Glycogen_synthase_DULL1 -like Location: 282651 7-2827951 bp Feature: gene Location: 2828614-2830062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2828998-2829613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2828998-282961 3 bp Feature: domain Description: GIIM Note: maturase Location: 2829667-2829886 bp Feature: domain Description: GIIM Note: maturase Location: 2829667-2829886 bp Feature: gene Location: 2830543-2832585 bp Feature: domain Description: OVP1 Location: 2830555-2832580 bp Feature: domain Description: OVP1 Location: 2830555-2832580 bp Feature: gene Location: 2832985-2834253 bp Feature: domain Description: LarA Location: 2833135-2834239 bp Feature: domain Description: LarA Location: 28331 35-2834239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDC1_DGC_like (cd12914), Cache_2 (smart01049), PRK11360 (two-component system sensor histidine kinase AtoS), sensory_box (TIGR00229), PRK13557 (histidine kinase; Provisional), CvfB (COG2996), RVT-GII, GIIM (pfam08388), BI-1-like_bacterial (cd10432), ABC_cobalt_CbiO_domain1 (cd03225)
TupB, SpoU (COG0566), LptD (COG1452), FolC (COG0285), PRK05654 (acetyl-CoA carboxylase carboxyltransferase subunit beta), trpA (TIGR00262), M48A_Zmpste24p_like (cd07343), GT5_Glycogen_synthase_DULL1-like (cd03791), OVP1 (COG3808), LarA (COG3875)