myRT

myRT report for GCA_002117995.1_ASM211799v1

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Seq: BDQH01000261.1 Lactobacillus acidipiscis DNA, strain: JCM 10692, scaffold: sequence277, whole genome shotgun sequence (16895 bp)
Overview 1 RT 1: 10787-16199 bp Neighborhood of RT #1 [10787, 16237] TnpB_IS66 RVT-GII YdfJ DHAK_reg Feature: gene Location: 10787-11005 bp Feature: domain Description: TnpB_IS66 Location: 10820-10922 bp Feature: domain Description: TnpB_IS66 Location: 1 0820-1 0922 bp Feature: gene Location: 10995-11177 bp Feature: gene Location: 11549-11998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11867-11993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 867-1 1 993 bp Feature: gene Location: 12818-15517 bp Feature: domain Description: YdfJ Location: 12845-15440 bp Feature: domain Description: YdfJ Location: 1 2845-1 5440 bp Feature: gene Location: 15674-16237 bp Feature: domain Description: DHAK_reg Location: 15752-16199 bp Feature: domain Description: DHAK_reg Location: 1 5752-1 61 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, YdfJ (COG2409), DHAK_reg (TIGR02366)

Seq: BDQH01000029.1 Lactobacillus acidipiscis DNA, strain: JCM 10692, scaffold: sequence031, whole genome shotgun sequence (1404 bp)
Overview 1 RT 1: 17-953 bp Neighborhood of RT #1 [17, 1132] RVT-GII GIIM Feature: gene Location: 17-1132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65-683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65-683 bp Feature: domain Description: GIIM Note: maturase Location: 737-953 bp Feature: domain Description: GIIM Note: maturase Location: 737-953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BDQH01000084.1 Lactobacillus acidipiscis DNA, strain: JCM 10692, scaffold: sequence088, whole genome shotgun sequence (23298 bp)
Overview 1 RT 1: 19403-22535 bp Neighborhood of RT #1 [19403, 22606] UreE_C Ape1-like_AP-endo RVT-GII GIIM Feature: gene Location: 19403-20155 bp Feature: domain Description: UreE_C Location: 19565-20081 bp Feature: domain Description: UreE_C Location: 19565-20081 bp Feature: gene Location: 20221-21048 bp Feature: domain Description: Ape1-like_AP-endo Location: 20224-21040 bp Feature: domain Description: Ape1-like_AP-endo Location: 20224-21040 bp Feature: gene Location: 21392-22606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21710-22328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21710-223 28 bp Feature: domain Description: GIIM Note: maturase Location: 22385-22535 bp Feature: domain Description: GIIM Note: maturase Location: 223 85-2253 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UreE_C (pfam05194), Ape1-like_AP-endo (cd09087), RVT-GII, GIIM (pfam08388)

Seq: BDQH01000099.1 Lactobacillus acidipiscis DNA, strain: JCM 10692, scaffold: sequence104, whole genome shotgun sequence (1494 bp)
Overview 1 RT 1: 49-1288 bp Neighborhood of RT #1 [49, 1464] RVT-GII GIIM DDE_Tnp_ISL3 Feature: gene Location: 49-789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67-340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67-34 0 bp Feature: domain Description: GIIM Note: maturase Location: 394-613 bp Feature: domain Description: GIIM Note: maturase Location: 394 -613 bp Feature: gene Location: 742-1464 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 748-1288 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 74 8-1288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_ISL3 (pfam01610)

Seq: BDQH01000011.1 Lactobacillus acidipiscis DNA, strain: JCM 10692, scaffold: sequence012, whole genome shotgun sequence (8301 bp)
Overview 1 RT 1: 1008-6002 bp Neighborhood of RT #1 [1008, 6007] RVT-GII MFS_DtpA_like ProC Feature: gene Location: 1008-1730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1335-1713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1335 -1713 bp Feature: gene Location: 3272-4738 bp Feature: domain Description: MFS_DtpA_like Location: 3311-4706 bp Feature: domain Description: MFS_DtpA_like Location: 3311-4706 bp Feature: gene Location: 5210-6007 bp Feature: domain Description: ProC Location: 5213-6002 bp Feature: domain Description: ProC Location: 5 213-6002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MFS_DtpA_like (cd17346), ProC (COG0345)

Seq: BDQH01000017.1 Lactobacillus acidipiscis DNA, strain: JCM 10692, scaffold: sequence018, whole genome shotgun sequence (42347 bp)
Overview 1 RT 1: 2204-7933 bp Neighborhood of RT #1 [2204, 7956] HTH_MARR DDE_Tnp_1_3 RVT-GII GIIM CsbD YbiR_permease Feature: gene Location: 2204-2650 bp Feature: domain Description: HTH_MARR Location: 2297-2549 bp Feature: domain Description: HTH_MARR Location: 2297-2549 bp Feature: gene Location: 2951-3736 bp Feature: domain Description: DDE_Tnp_1_3 Location: 3305-3713 bp Feature: domain Description: DDE_Tnp_1_3 Location: 3305-3713 bp Feature: gene Location: 4769-5917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4850-5468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4850-546 8 bp Feature: domain Description: GIIM Note: maturase Location: 5522-5738 bp Feature: domain Description: GIIM Note: maturase Location: 5522-5738 bp Feature: gene Location: 6466-6729 bp Feature: domain Description: CsbD Location: 6562-6718 bp Feature: domain Description: CsbD Location: 6 56 2-6 718 bp Feature: gene Location: 6850-7956 bp Feature: domain Description: YbiR_permease Location: 6892-7933 bp Feature: domain Description: YbiR_permease Location: 6 892-7933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_MARR (smart00347), DDE_Tnp_1_3 (pfam13612), RVT-GII, GIIM (pfam08388), CsbD (pfam05532), YbiR_permease (cd01117)

Seq: BDQH01000233.1 Lactobacillus acidipiscis DNA, strain: JCM 10692, scaffold: sequence248, whole genome shotgun sequence (4454 bp)
Overview 1 RT 1: 735-4058 bp Neighborhood of RT #1 [735, 4234] PepD DegV RVT-GII GIIM Feature: gene Location: 735-2138 bp Feature: domain Description: PepD Location: 756-2130 bp Feature: domain Description: PepD Location: 7 56-2130 bp Feature: gene Location: 2292-3221 bp Feature: domain Description: DegV Location: 2331-3159 bp Feature: domain Description: DegV Location: 2331-3159 bp Feature: gene Location: 3458-4234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3461-3785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3461-37 85 bp Feature: domain Description: GIIM Note: maturase Location: 3839-4058 bp Feature: domain Description: GIIM Note: maturase Location: 3839-4058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DegV (TIGR00762), RVT-GII, GIIM (pfam08388), PepD (COG4690)

Seq: BDQH01000049.1 Lactobacillus acidipiscis DNA, strain: JCM 10692, scaffold: sequence052, whole genome shotgun sequence (14419 bp)
Overview 1 RT 1: 2853-8920 bp Neighborhood of RT #1 [2853, 8925] INT_C_like_3 RVT-GII GIIM benzyl_alcohol_DH Uup Feature: gene Location: 2853-3440 bp Feature: domain Description: INT_C_like_3 Location: 2862-3417 bp Feature: domain Description: INT_C_like_3 Location: 28 62-3417 bp Feature: gene Location: 3453-3812 bp Feature: gene Location: 3938-5323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4256-4874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4256-48 74 bp Feature: domain Description: GIIM Note: maturase Location: 4928-5144 bp Feature: domain Description: GIIM Note: maturase Location: 4928 -5144 bp Feature: gene Location: 5823-6953 bp Feature: domain Description: benzyl_alcohol_DH Location: 5832-6921 bp Feature: domain Description: benzyl_alcohol_DH Location: 58 32-6921 bp Feature: gene Location: 7429-8925 bp Feature: domain Description: Uup Location: 7432-8920 bp Feature: domain Description: Uup Location: 7432-8 920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_C_like_3 (cd01192), RVT-GII, GIIM (pfam08388), benzyl_alcohol_DH (cd08278), Uup (COG0488)

Seq: BDQH01000036.1 Lactobacillus acidipiscis DNA, strain: JCM 10692, scaffold: sequence039, whole genome shotgun sequence (1150 bp)
Overview 1 RT 1: 72-762 bp Neighborhood of RT #1 [72, 941] RVT-GII GIIM Feature: gene Location: 72-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75-492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75-49 2 bp Feature: domain Description: GIIM Note: maturase Location: 546-762 bp Feature: domain Description: GIIM Note: maturase Location: 546-762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)