myRT

myRT report for GCA_002119345.1_ASM211934v1

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Seq: NBYR01000001.1 Halomonas sp. CSM-2 Contig_109, whole genome shotgun sequence (325242 bp)
Overview 1 RT 1: 300534-308883 bp Neighborhood of RT #1 [300534, 308954] MdlB RVT-GII Intron_maturas2 HNHc HsdM RMtype1_S_EcoR124I-TRD2-CR2_like RMtype1_S_TRD-CR_like Feature: gene Location: 300534-302306 bp Feature: domain Description: MdlB Location: 300537-302268 bp Feature: domain Description: MdlB Location: 300537-302268 bp Feature: gene Location: 302438-302959 bp Feature: gene Location: 303735-305591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304005-304824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304005-304824 bp Feature: domain Description: Intron_maturas2 Location: 304920-305205 bp Feature: domain Description: Intron_maturas2 Location: 304920-305205 bp Feature: domain Description: HNHc Note: nucleases Location: 305352-305517 bp Feature: domain Description: HNHc Note: nucleases Location: 305352-30551 7 bp Feature: gene Location: 305824-307884 bp Feature: domain Description: HsdM Location: 305929-307438 bp Feature: domain Description: HsdM Location: 305929-307438 bp Feature: gene Location: 307881-308954 bp Feature: domain Description: RMtype1_S_EcoR124I-TRD2-CR2_like Location: 307965-308511 bp Feature: domain Description: RMtype1 _S_EcoR1 24I-TRD2-CR2_like Location: 307965-30851 1 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 308616-308883 bp Feature: domain Description: RMtype1 _S_TRD-CR_like Location: 30861 6-308883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HsdM (COG0286), RMtype1_S_EcoR124I-TRD2-CR2_like (cd17249), RMtype1_S_TRD-CR_like (cl38903)

Seq: NBYR01000047.1 Halomonas sp. CSM-2 Contig_36, whole genome shotgun sequence (3477 bp)
Overview 1 RT 1: 159-2340 bp Neighborhood of RT #1 [159, 2340] RVT-GII DUF1523 Feature: gene Location: 159-752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 04-405 bp Feature: gene Location: 934-1581 bp Feature: domain Description: DUF1523 Location: 952-1411 bp Feature: domain Description: DUF152 3 Location: 952 -1411 bp Feature: gene Location: 1954-2340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF1523 (pfam07509)

Seq: NBYR01000048.1 Halomonas sp. CSM-2 Contig_43, whole genome shotgun sequence (3438 bp)
Overview 1 RT 1: 672-3310 bp Neighborhood of RT #1 [672, 3348] Transposase_mut RVT-GII Feature: gene Location: 672-1985 bp Feature: domain Description: Transposase_mut Location: 696-1746 bp Feature: domain Description: Transposase_mut Location: 696-1746 bp Feature: gene Location: 2026-2511 bp Feature: gene Location: 2596-3348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2878-3310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2878-3 3 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-GII