myRT

myRT report for GCA_002119955.1_ASM211995v1

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Seq: MSZJ01000063.1 Klebsiella pneumoniae strain KP024 Contig_63, whole genome shotgun sequence (4875 bp)
Overview 1 RT 1: 31-2365 bp Neighborhood of RT #1 [31, 2373] RVT-GII InsA Feature: gene Location: 31-146 bp Feature: gene Location: 211-462 bp Feature: gene Location: 462-1946 bp Ori: OSZ10264.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-1554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-1 554 bp Feature: gene Location: 1939-2064 bp Feature: gene Location: 2098-2373 bp Ori: OSZ10266.1 Feature: domain Description: InsA Location: 2104-2365 bp Feature: domain Description: InsA Location: 21 04-2365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsA (COG3677)

Seq: MSZJ01000046.1 Klebsiella pneumoniae strain KP024 Contig_46, whole genome shotgun sequence (11134 bp)
Overview 1 RT 1: 1885-5055 bp Neighborhood of RT #1 [1885, 5069] RVT-GII PRK10276 Feature: gene Location: 1885-2097 bp Feature: gene Location: 2267-2497 bp Feature: gene Location: 2731-4239 bp Ori: OSZ11778.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3133-3847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3133-3847 bp Feature: gene Location: 4239-4490 bp Feature: gene Location: 4644-5069 bp Ori: OSZ11780.1 Feature: domain Description: PRK10276 Location: 4647-5055 bp Feature: domain Description: PRK102 76 Location: 4647-5055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: MSZJ01000008.1 Klebsiella pneumoniae strain KP024 Contig_8, whole genome shotgun sequence (272162 bp)
Overview 1 RT 1: 264551-271899 bp Neighborhood of RT #1 [264551, 271949] FimC FimD RVT-UG4 Integrase_1 PRK09692 Feature: gene Location: 264551-265315 bp Ori: OSZ18032.1 Feature: domain Description: FimC Location: 264596-265298 bp Feature: domain Description: FimC Location: 264596-265298 bp Feature: gene Location: 265362-267956 bp Ori: OSZ18033.1 Feature: domain Description: FimD Location: 265404-267945 bp Feature: domain Description: FimD Location: 265404-267945 bp Feature: gene Location: 267953-270034 bp Ori: OSZ18034.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 268364-268808 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2683 64-268808 bp Feature: gene Location: 270076-270531 bp Ori: OSZ18035.1 Feature: domain Description: Integrase_1 Location: 270079-270313 bp Feature: domain Description: Integrase_1 Location: 270079-2703 13 bp Feature: gene Location: 270711-271949 bp Feature: domain Description: PRK09692 Location: 270717-271899 bp Feature: domain Description: PRK09692 Location: 270717-271899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), PRK09692 (Integrase; provisional)

Seq: MSZJ01000049.1 Klebsiella pneumoniae strain KP024 Contig_49, whole genome shotgun sequence (10610 bp)
Overview 1 RT 1: 3161-7684 bp Neighborhood of RT #1 [3161, 7764] HTH_XRE RVT-Retrons PRK13889 KOG0143 Feature: gene Location: 3161-3376 bp Feature: gene Location: 3467-3748 bp Ori: OSZ11735.1 Feature: domain Description: HTH_XRE Location: 3482-3647 bp Feature: domain Description: HTH_XRE Location: 34 82-364 7 bp Feature: gene Location: 3741-4841 bp Ori: OSZ11736.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3882-4434 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3882-4 4 34 bp Feature: gene Location: 4918-6420 bp Ori: OSZ11737.1 Feature: domain Description: PRK13889 Location: 4921-5500 bp Feature: domain Description: PRK13889 Location: 4 921-5500 bp Feature: gene Location: 7282-7764 bp Ori: OSZ11738.1 Feature: domain Description: KOG0143 Location: 7291-7684 bp Feature: domain Description: KOG014 3 Location: 7291-7684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), KOG0143 (KOG0143, Iron/ascorbate family oxidoreductases )