myRT

myRT report for GCA_002119995.1_ASM211999v1

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Seq: MSZP01000001.1 Alcaligenes faecalis strain GZAF3 Contig_1, whole genome shotgun sequence (1141702 bp)
Overview 1 RT 1: 1061251-1067910 bp Neighborhood of RT #1 [1061251, 1067957] dut PRK11727 RVT-UG5 LivF LivG Feature: gene Location: 1061251-1061712 bp Ori: OSZ46286.1 Feature: domain Description: dut Location: 1061263-1061707 bp Feature: domain Description: dut Location: 1 061 263-1 061 707 bp Feature: gene Location: 1061849-1062844 bp Ori: OSZ46287.1 Feature: domain Description: PRK11727 Location: 1061894-1062839 bp Feature: domain Description: PRK1 1 727 Location: 1 061 894-1 062839 bp Feature: gene Location: 1063033-1066251 bp Ori: OSZ46288.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1063564-1064062 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 063564-1 064062 bp Feature: gene Location: 1066387-1067124 bp Ori: OSZ46289.1 Feature: domain Description: LivF Location: 1066408-1067104 bp Feature: domain Description: LivF Location: 1 066408-1 0671 04 bp Feature: gene Location: 1067121-1067957 bp Ori: OSZ46290.1 Feature: domain Description: LivG Location: 1067160-1067910 bp Feature: domain Description: LivG Location: 1 0671 60-1 06791 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), PRK11727 (23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF), RVT-UG5, LivF (COG0410), LivG (COG0411)

Seq: MSZP01000003.1 Alcaligenes faecalis strain GZAF3 Contig_3, whole genome shotgun sequence (376346 bp)
Overview 1 RT 1: 338126-343979 bp Neighborhood of RT #1 [338126, 344086] DEXHc_Snf RVT_N RVT-GII GIIM HNHc HepA SF2_C_SNF conj_PilL Feature: gene Location: 338126-338437 bp Feature: gene Location: 338575-339630 bp Ori: OSZ43680.1 Feature: domain Description: DEXHc_Snf Location: 338794-339055 bp Feature: domain Description: DEXHc_Snf Location: 338794-339055 bp Feature: gene Location: 340229-341947 bp Ori: OSZ43735.1 Feature: domain Description: RVT_N Location: 340286-340523 bp Feature: domain Description: RVT_N Location: 3402 86-34052 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340574-341225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340574-3412 2 5 bp Feature: domain Description: GIIM Note: maturase Location: 341279-341510 bp Feature: domain Description: GIIM Note: maturase Location: 3412 79-341510 bp Feature: domain Description: HNHc Note: nucleases Location: 341744-341900 bp Feature: domain Description: HNHc Note: nucleases Location: 341744-341900 bp Feature: gene Location: 342015-343274 bp Ori: OSZ43681.1 Feature: domain Description: HepA Location: 342027-342168 bp Feature: domain Description: HepA Location: 342 02 7-342 168 bp Feature: domain Description: SF2_C_SNF Location: 342714-343110 bp Feature: domain Description: SF2 _C_SNF Location: 342 714-343110 bp Feature: gene Location: 343508-344086 bp Ori: OSZ43682.1 Feature: domain Description: conj_PilL Location: 343670-343979 bp Feature: domain Description: conj_PilL Location: 343670-343979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HepA (COG0553), SF2_C_SNF (cd18793), conj_PilL (TIGR03748)

Seq: MSZP01000002.1 Alcaligenes faecalis strain GZAF3 Contig_2, whole genome shotgun sequence (808997 bp)
Overview 1 RT 1: 507066-513609 bp Neighborhood of RT #1 [507066, 513620] type_I_sec_TolC Pcm RVT_N RVT-GII GIIM HNHc PRK05584 PRK06427 Feature: gene Location: 507066-508397 bp Ori: OSZ44536.1 Feature: domain Description: type_I_sec_TolC Location: 507132-508386 bp Feature: domain Description: type_I_sec_TolC Location: 50713 2-5083 86 bp Feature: gene Location: 508404-509084 bp Ori: OSZ44809.1 Feature: domain Description: Pcm Location: 508449-509073 bp Feature: domain Description: Pcm Location: 508449-509073 bp Feature: gene Location: 509261-510952 bp Ori: OSZ44537.1 Feature: domain Description: RVT_N Location: 509315-509555 bp Feature: domain Description: RVT_N Location: 5093 15-509555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509606-510254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509606-510254 bp Feature: domain Description: GIIM Note: maturase Location: 510305-510539 bp Feature: domain Description: GIIM Note: maturase Location: 5103 05-51053 9 bp Feature: domain Description: HNHc Note: nucleases Location: 510770-510917 bp Feature: domain Description: HNHc Note: nucleases Location: 510770-510917 bp Feature: gene Location: 512066-512761 bp Ori: OSZ44538.1 Feature: domain Description: PRK05584 Location: 512075-512753 bp Feature: domain Description: PRK05584 Location: 512075-512753 bp Feature: gene Location: 512802-513620 bp Ori: OSZ44539.1 Feature: domain Description: PRK06427 Location: 512808-513609 bp Feature: domain Description: PRK06427 Location: 512808-513 609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_sec_TolC (TIGR01844), Pcm (COG2518), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05584 (5'-methylthioadenosine/adenosylhomocysteine nucleosidase), PRK06427 (bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed)