myRT

myRT report for GCA_002120025.1_ASM212002v1

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Seq: MSZQ01000045.1 Alcaligenes faecalis strain GZAF4 Contig_45, whole genome shotgun sequence (11043 bp)
Overview 1 RT 1: 8276-10999 bp Neighborhood of RT #1 [8276, 11043] HTH_XRE RVT-Retrons DUF2513 HTH_37 Feature: gene Location: 8276-8515 bp Feature: gene Location: 8569-8874 bp Ori: OSZ44844.1 Feature: domain Description: HTH_XRE Location: 8581-8746 bp Feature: domain Description: HTH_XRE Location: 8581 -8746 bp Feature: gene Location: 8840-9799 bp Ori: OSZ44845.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8990-9557 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8990-9557 bp Feature: gene Location: 9814-10194 bp Ori: OSZ44846.1 Feature: domain Description: DUF2513 Location: 9838-10129 bp Feature: domain Description: DUF251 3 Location: 9838-1 01 29 bp Feature: gene Location: 10744-11043 bp Ori: OSZ44847.1 Feature: domain Description: HTH_37 Location: 10768-10999 bp Feature: domain Description: HTH_37 Location: 1 0768-1 0999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, DUF2513 (pfam10711), HTH_37 (pfam13744)

Seq: MSZQ01000004.1 Alcaligenes faecalis strain GZAF4 Contig_4, whole genome shotgun sequence (222979 bp)
Overview 1 RT 1: 184759-190612 bp Neighborhood of RT #1 [184759, 190719] DEXHc_Snf RVT_N RVT-GII GIIM HNHc HepA SF2_C_SNF conj_PilL Feature: gene Location: 184759-185070 bp Feature: gene Location: 185208-186263 bp Ori: OSZ51668.1 Feature: domain Description: DEXHc_Snf Location: 185427-185688 bp Feature: domain Description: DEXHc_Snf Location: 18542 7-185688 bp Feature: gene Location: 186862-188580 bp Ori: OSZ51710.1 Feature: domain Description: RVT_N Location: 186919-187156 bp Feature: domain Description: RVT_N Location: 186919-187156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187207-187858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1872 07-187858 bp Feature: domain Description: GIIM Note: maturase Location: 187912-188143 bp Feature: domain Description: GIIM Note: maturase Location: 187912 -188143 bp Feature: domain Description: HNHc Note: nucleases Location: 188377-188533 bp Feature: domain Description: HNHc Note: nucleases Location: 188377-188533 bp Feature: gene Location: 188648-189907 bp Ori: OSZ51669.1 Feature: domain Description: HepA Location: 188660-188801 bp Feature: domain Description: HepA Location: 188660-188801 bp Feature: domain Description: SF2_C_SNF Location: 189347-189743 bp Feature: domain Description: SF2 _C_SNF Location: 189347-189743 bp Feature: gene Location: 190141-190719 bp Ori: OSZ51670.1 Feature: domain Description: conj_PilL Location: 190303-190612 bp Feature: domain Description: conj_PilL Location: 190303-190612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HepA (COG0553), SF2_C_SNF (cd18793), conj_PilL (TIGR03748)

Seq: MSZQ01000010.1 Alcaligenes faecalis strain GZAF4 Contig_10, whole genome shotgun sequence (167494 bp)
Overview 1 RT 1: 73744-80445 bp Neighborhood of RT #1 [73744, 80450] LivG LivF RVT-UG5 PRK11727 dut Feature: gene Location: 73744-74580 bp Ori: OSZ49926.1 Feature: domain Description: LivG Location: 73783-74533 bp Feature: domain Description: LivG Location: 73 783 -7453 3 bp Feature: gene Location: 74577-75314 bp Ori: OSZ49927.1 Feature: domain Description: LivF Location: 74598-75294 bp Feature: domain Description: LivF Location: 74598-75294 bp Feature: gene Location: 75450-78668 bp Ori: OSZ49928.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 75981-76479 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 75981-76479 bp Feature: gene Location: 78857-79852 bp Ori: OSZ49929.1 Feature: domain Description: PRK11727 Location: 78902-79847 bp Feature: domain Description: PRK11727 Location: 78902-79847 bp Feature: gene Location: 79989-80450 bp Ori: OSZ49930.1 Feature: domain Description: dut Location: 80001-80445 bp Feature: domain Description: dut Location: 80001-80445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LivG (COG0411), LivF (COG0410), RVT-UG5, PRK11727 (23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF), dut (TIGR00576)

Seq: MSZQ01000008.1 Alcaligenes faecalis strain GZAF4 Contig_8, whole genome shotgun sequence (176652 bp)
Overview 1 RT 1: 82720-89263 bp Neighborhood of RT #1 [82720, 89274] type_I_sec_TolC Pcm RVT_N RVT-GII GIIM HNHc PRK05584 PRK06427 Feature: gene Location: 82720-84051 bp Ori: OSZ50380.1 Feature: domain Description: type_I_sec_TolC Location: 82786-84040 bp Feature: domain Description: type_I_sec_TolC Location: 82786-84 04 0 bp Feature: gene Location: 84058-84738 bp Ori: OSZ50467.1 Feature: domain Description: Pcm Location: 84103-84727 bp Feature: domain Description: Pcm Location: 84 103-84 727 bp Feature: gene Location: 84915-86606 bp Ori: OSZ50381.1 Feature: domain Description: RVT_N Location: 84969-85209 bp Feature: domain Description: RVT_N Location: 84 969-85209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85260-85908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85260-85908 bp Feature: domain Description: GIIM Note: maturase Location: 85959-86193 bp Feature: domain Description: GIIM Note: maturase Location: 85959-86193 bp Feature: domain Description: HNHc Note: nucleases Location: 86424-86571 bp Feature: domain Description: HNHc Note: nucleases Location: 864 24 -86571 bp Feature: gene Location: 87720-88415 bp Ori: OSZ50382.1 Feature: domain Description: PRK05584 Location: 87729-88407 bp Feature: domain Description: PRK05584 Location: 87729-884 07 bp Feature: gene Location: 88456-89274 bp Ori: OSZ50383.1 Feature: domain Description: PRK06427 Location: 88462-89263 bp Feature: domain Description: PRK064 27 Location: 884 62-89263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_sec_TolC (TIGR01844), Pcm (COG2518), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05584 (5'-methylthioadenosine/adenosylhomocysteine nucleosidase), PRK06427 (bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed)