myRT

myRT report for GCA_002120045.1_ASM212004v1

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Seq: MSZR01000001.1 Alcaligenes faecalis strain GZAF5 Contig_1, whole genome shotgun sequence (376326 bp)
Overview 1 RT 1: 338106-343959 bp Neighborhood of RT #1 [338106, 344066] DEXHc_Snf RVT_N RVT-GII GIIM HNHc HepA SF2_C_SNF conj_PilL Feature: gene Location: 338106-338417 bp Feature: gene Location: 338555-339610 bp Ori: OSZ55171.1 Feature: domain Description: DEXHc_Snf Location: 338774-339035 bp Feature: domain Description: DEXHc_Snf Location: 338774-339035 bp Feature: gene Location: 340209-341927 bp Ori: OSZ55225.1 Feature: domain Description: RVT_N Location: 340266-340503 bp Feature: domain Description: RVT_N Location: 340266-340503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340554-341205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340554-341 205 bp Feature: domain Description: GIIM Note: maturase Location: 341259-341490 bp Feature: domain Description: GIIM Note: maturase Location: 341 259-341 490 bp Feature: domain Description: HNHc Note: nucleases Location: 341724-341880 bp Feature: domain Description: HNHc Note: nucleases Location: 341 724-341 880 bp Feature: gene Location: 341995-343254 bp Ori: OSZ55172.1 Feature: domain Description: HepA Location: 342007-342148 bp Feature: domain Description: HepA Location: 342007-3421 48 bp Feature: domain Description: SF2_C_SNF Location: 342694-343090 bp Feature: domain Description: SF2_C_SNF Location: 342694-343090 bp Feature: gene Location: 343488-344066 bp Ori: OSZ55173.1 Feature: domain Description: conj_PilL Location: 343650-343959 bp Feature: domain Description: conj_PilL Location: 343650-343959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HepA (COG0553), SF2_C_SNF (cd18793), conj_PilL (TIGR03748)

Seq: MSZR01000019.1 Alcaligenes faecalis strain GZAF5 Contig_19, whole genome shotgun sequence (92024 bp)
Overview 1 RT 1: 87059-89870 bp Neighborhood of RT #1 [87059, 92024] dut PRK11727 RVT-UG5 Feature: gene Location: 87059-87520 bp Ori: OSZ50303.1 Feature: domain Description: dut Location: 87071-87515 bp Feature: domain Description: dut Location: 87071-87515 bp Feature: gene Location: 87657-88652 bp Ori: OSZ50304.1 Feature: domain Description: PRK11727 Location: 87702-88647 bp Feature: domain Description: PRK1172 7 Location: 87702 -88647 bp Feature: gene Location: 88841-92024 bp Ori: OSZ50305.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 89372-89870 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 89372 -89870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), PRK11727 (23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF), RVT-UG5

Seq: MSZR01000033.1 Alcaligenes faecalis strain GZAF5 Contig_33, whole genome shotgun sequence (18476 bp)
Overview 1 RT 1: 15709-18432 bp Neighborhood of RT #1 [15709, 18476] HTH_XRE RVT-Retrons DUF2513 HTH_37 Feature: gene Location: 15709-15948 bp Feature: gene Location: 16002-16307 bp Ori: OSZ48253.1 Feature: domain Description: HTH_XRE Location: 16014-16179 bp Feature: domain Description: HTH_XRE Location: 16014-16179 bp Feature: gene Location: 16273-17232 bp Ori: OSZ48254.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16423-16990 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16423 -16990 bp Feature: gene Location: 17265-17627 bp Ori: OSZ48255.1 Feature: domain Description: DUF2513 Location: 17271-17562 bp Feature: domain Description: DUF2513 Location: 17271-17562 bp Feature: gene Location: 18177-18476 bp Ori: OSZ48256.1 Feature: domain Description: HTH_37 Location: 18201-18432 bp Feature: domain Description: HTH_3 7 Location: 18201-1843 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, DUF2513 (pfam10711), HTH_37 (pfam13744)

Seq: MSZR01000011.1 Alcaligenes faecalis strain GZAF5 Contig_11, whole genome shotgun sequence (155923 bp)
Overview 1 RT 1: 71673-78216 bp Neighborhood of RT #1 [71673, 78227] PRK06427 PRK05584 RVT_N RVT-GII GIIM HNHc Pcm type_I_sec_TolC Feature: gene Location: 71673-72491 bp Ori: OSZ52480.1 Feature: domain Description: PRK06427 Location: 71679-72480 bp Feature: domain Description: PRK064 27 Location: 71679-724 80 bp Feature: gene Location: 72532-73227 bp Ori: OSZ52481.1 Feature: domain Description: PRK05584 Location: 72541-73219 bp Feature: domain Description: PRK05584 Location: 7254 1-73219 bp Feature: gene Location: 74341-76032 bp Ori: OSZ52482.1 Feature: domain Description: RVT_N Location: 74395-74635 bp Feature: domain Description: RVT_N Location: 74 395-74 635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74686-75334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 686-75334 bp Feature: domain Description: GIIM Note: maturase Location: 75385-75619 bp Feature: domain Description: GIIM Note: maturase Location: 75385-75619 bp Feature: domain Description: HNHc Note: nucleases Location: 75850-75997 bp Feature: domain Description: HNHc Note: nucleases Location: 75850-75997 bp Feature: gene Location: 76209-76889 bp Ori: OSZ52555.1 Feature: domain Description: Pcm Location: 76254-76878 bp Feature: domain Description: Pcm Location: 76254 -76878 bp Feature: gene Location: 76896-78227 bp Ori: OSZ52483.1 Feature: domain Description: type_I_sec_TolC Location: 76962-78216 bp Feature: domain Description: type_I_sec_TolC Location: 76962-78216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06427 (bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed), PRK05584 (5'-methylthioadenosine/adenosylhomocysteine nucleosidase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Pcm (COG2518), type_I_sec_TolC (TIGR01844)