myRT

myRT report for GCA_002133365.1_ASM213336v1

Download annotations/find similar RTs

Seq: CM007910.1 Escherichia coli strain CH613_eco plasmid unnamed3, complete sequence, whole genome shotgun sequence (124845 bp)
Overview 1 RT 1: 58978-64530 bp Neighborhood of RT #1 [58978, 65063] PRK10276 RVT-GII DDE_Tnp_IS1 DDE_Tnp_1_5 Feature: gene Location: 58978-59361 bp Feature: domain Description: PRK10276 Location: 58984-59326 bp Feature: domain Description: PRK1 0276 Location: 58984-59326 bp Feature: gene Location: 59363-59602 bp Feature: gene Location: 60004-61488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60406-61096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60406-61 096 bp Feature: gene Location: 61834-62337 bp Feature: domain Description: DDE_Tnp_IS1 Location: 61945-62335 bp Feature: domain Description: DDE_Tnp_IS1 Location: 61 945-62335 bp Feature: gene Location: 64140-65063 bp Feature: domain Description: DDE_Tnp_1_5 Location: 64197-64530 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 641 97-64530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DDE_Tnp_IS1 (pfam03400), DDE_Tnp_1_5 (pfam13737)

Seq: MCRE01000001.1 Escherichia coli strain CH613_eco unitig_0, whole genome shotgun sequence (4673761 bp)
Overview 1 RT 1: 2143857-2146985 bp Neighborhood of RT #1 [2143857, 2146985] Ogr_Delta PHA02517 RVT-GII GIIM Feature: gene Location: 2143857-2144117 bp Feature: domain Description: Ogr_Delta Location: 2143866-2144007 bp Feature: domain Description: Ogr_Delta Location: 2 143866-2 144007 bp Feature: gene Location: 2144231-2144719 bp Feature: domain Description: PHA02517 Location: 2144234-2144708 bp Feature: domain Description: PHA02 517 Location: 2 1442 34-2 144708 bp Feature: gene Location: 2144800-2146308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2145058-2145790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 145058-2 145790 bp Feature: domain Description: GIIM Note: maturase Location: 2145865-2146063 bp Feature: domain Description: GIIM Note: maturase Location: 2 145865-2 146063 bp Feature: gene Location: 2146277-2146702 bp Feature: gene Location: 2146617-2146985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: CM007909.1 Escherichia coli strain CH613_eco plasmid unnamed2, complete sequence, whole genome shotgun sequence (73943 bp)
Overview 1 RT 1: 9358-13127 bp 2 RT 2: 70599-72099 bp Neighborhood of RT #1 [9358, 13127] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [70599, 72796] DUF1380 RVT-GII Feature: gene Location: 9358-9780 bp Feature: domain Description: DUF1380 Location: 9361-9655 bp Feature: domain Description: DUF13 80 Location: 93 61-9655 bp Feature: gene Location: 9777-9968 bp Feature: gene Location: 10282-11949 bp Feature: RT Description: RVT_N Location: 10330-10567 bp Feature: RT Description: RVT_N Location: 103 3 0-10567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10618-11260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10618-11260 bp Feature: domain Description: GIIM Note: maturase Location: 11311-11545 bp Feature: domain Description: GIIM Note: maturase Location: 113 11-11545 bp Feature: domain Description: HNHc Note: nucleases Location: 11755-11914 bp Feature: domain Description: HNHc Note: nucleases Location: 11755-11914 bp Feature: gene Location: 12673-12885 bp Feature: gene Location: 12921-13127 bp Feature: gene Location: 70599-71021 bp Feature: domain Description: DUF1380 Location: 70602-70896 bp Feature: domain Description: DUF13 80 Location: 70602-70896 bp Feature: gene Location: 71018-71209 bp Feature: gene Location: 71523-72796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71526-72099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71526-72099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)