myRT

myRT report for GCA_002134765.1_ASM213476v1

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Seq: NBCL01000025.1 Escherichia coli strain 13B contig_25_47_71, whole genome shotgun sequence (139934 bp)
Overview 1 RT 1: 51196-55075 bp Neighborhood of RT #1 [51196, 55080] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51196-51651 bp Feature: domain Description: dut Location: 51199-51646 bp Feature: domain Description: dut Location: 51 1 99-51 646 bp Feature: gene Location: 51758-52354 bp Feature: domain Description: slmA Location: 51764-52340 bp Feature: domain Description: slmA Location: 51 764-52340 bp Feature: gene Location: 52400-53359 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52535-53084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52535-53084 bp Feature: gene Location: 53657-54298 bp Feature: domain Description: pyrE Location: 53660-54293 bp Feature: domain Description: pyrE Location: 53660-54293 bp Feature: gene Location: 54364-55080 bp Feature: domain Description: rph Location: 54367-55075 bp Feature: domain Description: rph Location: 54367-55075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NBCL01000045.1 Escherichia coli strain 13B contig_45_37_36, whole genome shotgun sequence (59466 bp)
Overview 1 RT 1: 56016-59425 bp Neighborhood of RT #1 [56016, 59445] YhhI YhhI IS285 RVT-GII PRK15434 Feature: gene Location: 56016-57066 bp Feature: domain Description: YhhI Location: 56019-56379 bp Feature: domain Description: YhhI Location: 56019-56379 bp Feature: domain Description: YhhI Location: 56439-56793 bp Feature: domain Description: YhhI Location: 56439-56793 bp Feature: gene Location: 57177-57928 bp Feature: domain Description: IS285 Location: 57207-57897 bp Feature: domain Description: IS2 85 Location: 572 07-57897 bp Feature: gene Location: 57977-58264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58142-58250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58142 -582 50 bp Feature: gene Location: 58972-59445 bp Feature: domain Description: PRK15434 Location: 58975-59425 bp Feature: domain Description: PRK15434 Location: 58975-5942 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase)

Seq: NBCL01000105.1 Escherichia coli strain 13B contig_106_22_42, whole genome shotgun sequence (7499 bp)
Overview 1 RT 1: 3362-7280 bp Neighborhood of RT #1 [3362, 7280] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3362-3595 bp Feature: domain Description: DUF905 Location: 3392-3590 bp Feature: domain Description: DUF905 Location: 3 3 92-3 590 bp Feature: gene Location: 3658-4155 bp Feature: domain Description: PRK13732 Location: 3661-4153 bp Feature: domain Description: PRK13 73 2 Location: 3 661-4153 bp Feature: gene Location: 4305-6206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4572-5403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4572-5403 bp Feature: domain Description: Intron_maturas2 Location: 5517-5775 bp Feature: domain Description: Intron_maturas2 Location: 5517-5775 bp Feature: domain Description: HNHc Note: nucleases Location: 5949-6111 bp Feature: domain Description: HNHc Note: nucleases Location: 5949-6111 bp Feature: gene Location: 6884-7090 bp Feature: gene Location: 7092-7280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NBCL01000028.1 Escherichia coli strain 13B contig_28_34_19, whole genome shotgun sequence (5818 bp)
Overview 1 RT 1: 13-2839 bp Neighborhood of RT #1 [13, 2839] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 13-299 bp Feature: gene Location: 873-2540 bp Feature: RT Description: RVT_N Location: 921-1158 bp Feature: RT Description: RVT_N Location: 921-1158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1209-1851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1209-1851 bp Feature: domain Description: GIIM Note: maturase Location: 1902-2136 bp Feature: domain Description: GIIM Note: maturase Location: 1902-2136 bp Feature: domain Description: HNHc Note: nucleases Location: 2346-2505 bp Feature: domain Description: HNHc Note: nucleases Location: 234 6-2505 bp Feature: gene Location: 2518-2703 bp Feature: gene Location: 2741-2839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)