myRT

myRT report for GCA_002134775.1_ASM213477v1

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Seq: NBCM01000009.1 Escherichia coli strain 34VL contig_9_65_48, whole genome shotgun sequence (237753 bp)
Overview 1 RT 1: 56016-60387 bp Neighborhood of RT #1 [56016, 60413] YhhI YhhI IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 56016-57066 bp Feature: domain Description: YhhI Location: 56019-56379 bp Feature: domain Description: YhhI Location: 5601 9-56379 bp Feature: domain Description: YhhI Location: 56439-56793 bp Feature: domain Description: YhhI Location: 56439-56793 bp Feature: gene Location: 57177-57928 bp Feature: domain Description: IS285 Location: 57207-57897 bp Feature: domain Description: IS285 Location: 57207-57897 bp Feature: gene Location: 57977-58264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58142-58250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 581 42-58250 bp Feature: gene Location: 58972-59445 bp Feature: domain Description: PRK15434 Location: 58975-59425 bp Feature: domain Description: PRK1 5434 Location: 58975-59425 bp Feature: gene Location: 59448-60413 bp Feature: domain Description: GDP_FS_SDR_e Location: 59463-60387 bp Feature: domain Description: GDP_FS_SDR_e Location: 59463-60387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)

Seq: NBCM01000140.1 Escherichia coli strain 34VL contig_141_50_14, whole genome shotgun sequence (5903 bp)
Overview 1 RT 1: 2158-5886 bp Neighborhood of RT #1 [2158, 5886] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2158-2391 bp Feature: domain Description: DUF905 Location: 2188-2386 bp Feature: domain Description: DUF905 Location: 2 188-2 386 bp Feature: gene Location: 2454-2951 bp Feature: domain Description: PRK13732 Location: 2457-2949 bp Feature: domain Description: PRK13732 Location: 2 457-2 949 bp Feature: gene Location: 3101-5002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3368-4199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3368-4199 bp Feature: domain Description: Intron_maturas2 Location: 4313-4571 bp Feature: domain Description: Intron_maturas2 Location: 4313-4571 bp Feature: domain Description: HNHc Note: nucleases Location: 4745-4907 bp Feature: domain Description: HNHc Note: nucleases Location: 4745-4907 bp Feature: gene Location: 5680-5886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NBCM01000113.1 Escherichia coli strain 34VL contig_114_70_50, whole genome shotgun sequence (3988 bp)
Overview 1 RT 1: 708-3780 bp Neighborhood of RT #1 [708, 3803] RVT_N RVT-GII GIIM HNHc PRK09738 Feature: gene Location: 708-932 bp Feature: gene Location: 836-1066 bp Feature: gene Location: 1380-3059 bp Feature: RT Description: RVT_N Location: 1431-1674 bp Feature: RT Description: RVT_N Location: 143 1-1674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1719-2361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1719-23 61 bp Feature: domain Description: GIIM Note: maturase Location: 2415-2646 bp Feature: domain Description: GIIM Note: maturase Location: 2415-2646 bp Feature: domain Description: HNHc Note: nucleases Location: 2859-3021 bp Feature: domain Description: HNHc Note: nucleases Location: 2859-3 021 bp Feature: gene Location: 3043-3264 bp Feature: gene Location: 3624-3803 bp Feature: domain Description: PRK09738 Location: 3627-3780 bp Feature: domain Description: PRK0973 8 Location: 3 627-3 780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional)

Seq: NBCM01000028.1 Escherichia coli strain 34VL contig_28_91_50, whole genome shotgun sequence (140169 bp)
Overview 1 RT 1: 84855-88734 bp Neighborhood of RT #1 [84855, 88739] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 84855-85571 bp Feature: domain Description: rph Location: 84858-85566 bp Feature: domain Description: rph Location: 84 858-85566 bp Feature: gene Location: 85637-86278 bp Feature: domain Description: pyrE Location: 85640-86273 bp Feature: domain Description: pyrE Location: 8564 0-86273 bp Feature: gene Location: 86576-87535 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86711-87260 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86711-87260 bp Feature: gene Location: 87581-88177 bp Feature: domain Description: slmA Location: 87587-88163 bp Feature: domain Description: slmA Location: 87587-88163 bp Feature: gene Location: 88284-88739 bp Feature: domain Description: dut Location: 88287-88734 bp Feature: domain Description: dut Location: 88287-88734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)