myRT

myRT report for GCA_002135625.1_ASM213562v1

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Seq: NFFE01000033.1 Pseudomonas aeruginosa strain S829_C17_RS S829_C17_RS_NODE_33_length_79487, whole genome shotgun sequence (79487 bp)
Overview 1 RT 1: 49934-59585 bp Neighborhood of RT #1 [49934, 59590] DUF262 COG3472 HATPase_c_3 RVT-Retrons DUF4354 CoxL Feature: gene Location: 49934-51598 bp Feature: domain Description: DUF262 Location: 50039-50624 bp Feature: domain Description: DUF262 Location: 50039-50624 bp Feature: domain Description: COG3472 Location: 50756-51584 bp Feature: domain Description: COG3472 Location: 50756-51 584 bp Feature: gene Location: 51707-53662 bp Feature: domain Description: HATPase_c_3 Location: 51776-52124 bp Feature: domain Description: HATPase_c_3 Location: 51 776-521 24 bp Feature: gene Location: 53843-54796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53954-54548 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53954-54548 bp Feature: gene Location: 56513-56893 bp Feature: domain Description: DUF4354 Location: 56516-56882 bp Feature: domain Description: DUF4354 Location: 5651 6-56882 bp Feature: gene Location: 57386-59590 bp Feature: domain Description: CoxL Location: 57404-59585 bp Feature: domain Description: CoxL Location: 57404-59585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), COG3472 (Uncharacterized protein ), HATPase_c_3 (pfam13589), RVT-Retrons, DUF4354 (pfam14263), CoxL (COG1529)

Seq: NFFE01000007.1 Pseudomonas aeruginosa strain S829_C17_RS S829_C17_RS_NODE_7_length_227468, whole genome shotgun sequence (227468 bp)
Overview 1 RT 1: 169048-177212 bp Neighborhood of RT #1 [169048, 177226] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 169048-170340 bp Feature: domain Description: PRK10770 Location: 169138-170332 bp Feature: domain Description: PRK10770 Location: 169138-170332 bp Feature: gene Location: 170321-173092 bp Feature: domain Description: LptD Location: 170516-173078 bp Feature: domain Description: LptD Location: 170516-173078 bp Feature: gene Location: 173225-174937 bp Feature: RT Description: RVT_N Location: 173282-173525 bp Feature: RT Description: RVT_N Location: 1732 82 -17352 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173570-174206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173570-1742 06 bp Feature: domain Description: YkfC Location: 174416-174566 bp Feature: domain Description: YkfC Location: 174416-174566 bp Feature: domain Description: HNH Note: nucleases Location: 174743-174881 bp Feature: domain Description: HNH Note: nucleases Location: 174743-174881 bp Feature: gene Location: 175125-175337 bp Feature: gene Location: 176210-177226 bp Feature: domain Description: COG3178 Location: 176213-177212 bp Feature: domain Description: COG3178 Location: 1762 13-1772 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: NFFE01000054.1 Pseudomonas aeruginosa strain S829_C17_RS S829_C17_RS_NODE_54_length_20877, whole genome shotgun sequence (20877 bp)
Overview 1 RT 1: 11656-15842 bp Neighborhood of RT #1 [11656, 15856] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 11656-12096 bp Feature: gene Location: 12204-12569 bp Feature: gene Location: 13573-14682 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13750-14434 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13 750-1443 4 bp Feature: gene Location: 14955-15311 bp Feature: domain Description: Avd_like Location: 14982-15285 bp Feature: domain Description: Avd_like Location: 14982-15285 bp Feature: gene Location: 15350-15856 bp Feature: domain Description: DUF1566 Location: 15518-15842 bp Feature: domain Description: DUF1566 Location: 15518-15842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: NFFE01000087.1 Pseudomonas aeruginosa strain S829_C17_RS S829_C17_RS_NODE_87_length_2426, whole genome shotgun sequence (2426 bp)
Overview 1 RT 1: 621-2292 bp Neighborhood of RT #1 [621, 2339] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 621-2339 bp Feature: RT Description: RVT_N Location: 678-915 bp Feature: RT Description: RVT_N Location: 678-915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966-1617 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1902 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1902 bp Feature: domain Description: HNHc Note: nucleases Location: 2136-2292 bp Feature: domain Description: HNHc Note: nucleases Location: 2136-2292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFFE01000025.1 Pseudomonas aeruginosa strain S829_C17_RS S829_C17_RS_NODE_25_length_98542, whole genome shotgun sequence (98542 bp)
Overview 1 RT 1: 40820-46650 bp Neighborhood of RT #1 [40820, 46655] SdhE RVT_N RVT-GII YkfC HNHc YgfZ HDOD Feature: gene Location: 40820-41272 bp Feature: gene Location: 41256-41510 bp Feature: domain Description: SdhE Location: 41262-41502 bp Feature: domain Description: SdhE Location: 41262-415 02 bp Feature: gene Location: 41600-43306 bp Feature: RT Description: RVT_N Location: 41657-41900 bp Feature: RT Description: RVT_N Location: 4165 7-41900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41945-42581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41945 -425 81 bp Feature: domain Description: YkfC Location: 42779-42884 bp Feature: domain Description: YkfC Location: 42779-42884 bp Feature: domain Description: HNHc Note: nucleases Location: 43094-43250 bp Feature: domain Description: HNHc Note: nucleases Location: 43094-4325 0 bp Feature: gene Location: 44774-45718 bp Feature: domain Description: YgfZ Location: 44783-45683 bp Feature: domain Description: YgfZ Location: 44783-45 683 bp Feature: gene Location: 45819-46655 bp Feature: domain Description: HDOD Location: 45822-46650 bp Feature: domain Description: HDOD Location: 45 822-4665 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), YgfZ (COG0354), HDOD (pfam08668)

Seq: NFFE01000017.1 Pseudomonas aeruginosa strain S829_C17_RS S829_C17_RS_NODE_17_length_128975, whole genome shotgun sequence (128975 bp)
Overview 1 RT 1: 49223-53630 bp Neighborhood of RT #1 [49223, 53806] ATPgrasp_ST ATPgrasp_Ter IS5 RVT-GII GIIM DUF772 Feature: gene Location: 49223-50221 bp Feature: domain Description: ATPgrasp_ST Location: 49535-49727 bp Feature: domain Description: ATPgrasp_ST Location: 49535-49727 bp Feature: domain Description: ATPgrasp_Ter Location: 49823-50198 bp Feature: domain Description: ATPgrasp_Ter Location: 49823-50198 bp Feature: gene Location: 50976-51446 bp Feature: domain Description: IS5 Location: 50982-51420 bp Feature: domain Description: IS5 Location: 50982-51420 bp Feature: gene Location: 51506-52774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51719-52376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51719-52376 bp Feature: domain Description: GIIM Note: maturase Location: 52454-52676 bp Feature: domain Description: GIIM Note: maturase Location: 52454-526 76 bp Feature: gene Location: 53163-53258 bp Feature: gene Location: 53294-53806 bp Feature: domain Description: DUF772 Location: 53444-53630 bp Feature: domain Description: DUF772 Location: 53444-536 30 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ATPgrasp_ST (pfam14397), ATPgrasp_Ter (pfam15632), IS5 (COG3039), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)