myRT

myRT report for GCA_002135635.1_ASM213563v1

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Seq: NFFG01000010.1 Pseudomonas aeruginosa strain S823_C17_RS S823_C17_RS_NODE_10_length_189610, whole genome shotgun sequence (189610 bp)
Overview 1 RT 1: 185236-189607 bp Neighborhood of RT #1 [185236, 189610] AdoMet_MTases DEXHc_Snf RVT_N RVT-GII GIIM Feature: gene Location: 185236-186681 bp Feature: domain Description: AdoMet_MTases Location: 185359-185725 bp Feature: domain Description: AdoMet_MTases Location: 1 85359-1 85725 bp Feature: gene Location: 186786-187811 bp Feature: domain Description: DEXHc_Snf Location: 186978-187224 bp Feature: domain Description: DEXHc_Snf Location: 1 86978-1 87224 bp Feature: gene Location: 188407-189610 bp Feature: RT Description: RVT_N Location: 188464-188701 bp Feature: RT Description: RVT_N Location: 1 88464-1 88701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188752-189403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 88752-1 89403 bp Feature: domain Description: GIIM Note: maturase Location: 189457-189607 bp Feature: domain Description: GIIM Note: maturase Location: 1 89457-1 89607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NFFG01000092.1 Pseudomonas aeruginosa strain S823_C17_RS S823_C17_RS_NODE_92_length_4564, whole genome shotgun sequence (4564 bp)
Overview 1 RT 1: 1268-4561 bp Neighborhood of RT #1 [1268, 4564] DEXHc_Snf RVT_N RVT-GII GIIM Feature: gene Location: 1268-1573 bp Feature: gene Location: 1709-2764 bp Feature: domain Description: DEXHc_Snf Location: 1928-2189 bp Feature: domain Description: DEXHc_Snf Location: 192 8-2 189 bp Feature: gene Location: 3361-4564 bp Feature: RT Description: RVT_N Location: 3418-3655 bp Feature: RT Description: RVT_N Location: 3418-3655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3706-4357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3706-4357 bp Feature: domain Description: GIIM Note: maturase Location: 4411-4561 bp Feature: domain Description: GIIM Note: maturase Location: 4411-4561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NFFG01000018.1 Pseudomonas aeruginosa strain S823_C17_RS S823_C17_RS_NODE_18_length_142066, whole genome shotgun sequence (142066 bp)
Overview 1 RT 1: 56976-67282 bp 2 RT 2: 83541-91734 bp Neighborhood of RT #1 [56976, 67284] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [83541, 91748] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 56976-58097 bp Feature: domain Description: COG3177 Location: 56994-58086 bp Feature: domain Description: COG3 177 Location: 56994-58086 bp Feature: gene Location: 58356-58492 bp Feature: gene Location: 58821-60506 bp Feature: RT Description: RVT_N Location: 58878-59118 bp Feature: RT Description: RVT_N Location: 58878-59118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59166-59802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59166-59802 bp Feature: domain Description: GIIM Note: maturase Location: 59856-60087 bp Feature: domain Description: GIIM Note: maturase Location: 59856-60087 bp Feature: domain Description: HNH Note: nucleases Location: 60339-60477 bp Feature: domain Description: HNH Note: nucleases Location: 603 3 9-60477 bp Feature: gene Location: 61587-65324 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61695-62352 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61695-623 52 bp Feature: domain Description: PRK09776 Location: 62565-63036 bp Feature: domain Description: PRK09776 Location: 62565-63 03 6 bp Feature: domain Description: PAS Location: 63096-63618 bp Feature: domain Description: PAS Location: 63 096-63 618 bp Feature: domain Description: PRK10060 Location: 63627-65274 bp Feature: domain Description: PRK10060 Location: 63 627-65274 bp Feature: gene Location: 65431-67284 bp Feature: domain Description: PRK05658 Location: 65443-67282 bp Feature: domain Description: PRK05658 Location: 65443 -67282 bp Feature: gene Location: 83541-84833 bp Feature: domain Description: PRK10770 Location: 83631-84825 bp Feature: domain Description: PRK10770 Location: 83 63 1-84825 bp Feature: gene Location: 84814-87615 bp Feature: domain Description: LptD Location: 85009-87601 bp Feature: domain Description: LptD Location: 85009-87601 bp Feature: gene Location: 87748-89460 bp Feature: RT Description: RVT_N Location: 87805-88048 bp Feature: RT Description: RVT_N Location: 87805-88048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88093-88726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88093 -88726 bp Feature: domain Description: YkfC Location: 88939-89089 bp Feature: domain Description: YkfC Location: 8893 9-89089 bp Feature: domain Description: HNH Note: nucleases Location: 89266-89404 bp Feature: domain Description: HNH Note: nucleases Location: 89266-89404 bp Feature: gene Location: 89647-89859 bp Feature: gene Location: 90732-91748 bp Feature: domain Description: COG3178 Location: 90735-91734 bp Feature: domain Description: COG3 178 Location: 9073 5-9173 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: NFFG01000146.1 Pseudomonas aeruginosa strain S823_C17_RS S823_C17_RS_NODE_146_length_430, whole genome shotgun sequence (430 bp)
Overview 1 RT 1: 40-409 bp Neighborhood of RT #1 [40, 430] RVT-GII Feature: gene Location: 40-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 3-4 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII