myRT

myRT report for GCA_002135765.1_ASM213576v1

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Seq: NFFQ01000006.1 Pseudomonas aeruginosa strain S700_C14_RS S700_C14_RS_NODE_6_length_265646, whole genome shotgun sequence (265646 bp)
Overview 1 RT 1: 238811-243371 bp Neighborhood of RT #1 [238811, 243394] DUF772 RVT-GII GIIM IS5 ATPgrasp_ST ATPgrasp_Ter Feature: gene Location: 238811-239323 bp Feature: domain Description: DUF772 Location: 238961-239147 bp Feature: domain Description: DUF772 Location: 238961 -2391 47 bp Feature: gene Location: 239359-239454 bp Feature: gene Location: 239843-241111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240056-240713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240056-24071 3 bp Feature: domain Description: GIIM Note: maturase Location: 240791-241013 bp Feature: domain Description: GIIM Note: maturase Location: 240791 -241 01 3 bp Feature: gene Location: 241171-241641 bp Feature: domain Description: IS5 Location: 241177-241615 bp Feature: domain Description: IS5 Location: 241 1 77-241 61 5 bp Feature: gene Location: 242396-243394 bp Feature: domain Description: ATPgrasp_ST Location: 242708-242900 bp Feature: domain Description: ATPgrasp_ST Location: 242708-242900 bp Feature: domain Description: ATPgrasp_Ter Location: 242996-243371 bp Feature: domain Description: ATPgrasp_Ter Location: 242996-243371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), IS5 (COG3039), ATPgrasp_ST (pfam14397), ATPgrasp_Ter (pfam15632)

Seq: NFFQ01000029.1 Pseudomonas aeruginosa strain S700_C14_RS S700_C14_RS_NODE_29_length_95900, whole genome shotgun sequence (95900 bp)
Overview 1 RT 1: 49935-59586 bp Neighborhood of RT #1 [49935, 59591] DUF262 COG3472 HATPase_c_3 RVT-Retrons DUF4354 CoxL Feature: gene Location: 49935-51599 bp Feature: domain Description: DUF262 Location: 50040-50625 bp Feature: domain Description: DUF2 62 Location: 50040-5062 5 bp Feature: domain Description: COG3472 Location: 50757-51585 bp Feature: domain Description: COG3472 Location: 50757-51585 bp Feature: gene Location: 51708-53663 bp Feature: domain Description: HATPase_c_3 Location: 51777-52125 bp Feature: domain Description: HATPase_c_3 Location: 51777-52 12 5 bp Feature: gene Location: 53844-54797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53955-54549 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53955-54549 bp Feature: gene Location: 56514-56894 bp Feature: domain Description: DUF4354 Location: 56517-56883 bp Feature: domain Description: DUF4354 Location: 56517-56883 bp Feature: gene Location: 57387-59591 bp Feature: domain Description: CoxL Location: 57405-59586 bp Feature: domain Description: CoxL Location: 57405-59586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), COG3472 (Uncharacterized protein ), HATPase_c_3 (pfam13589), RVT-Retrons, DUF4354 (pfam14263), CoxL (COG1529)

Seq: NFFQ01000081.1 Pseudomonas aeruginosa strain S700_C14_RS S700_C14_RS_NODE_81_length_2426, whole genome shotgun sequence (2426 bp)
Overview 1 RT 1: 88-1759 bp Neighborhood of RT #1 [88, 1806] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 88-1806 bp Feature: RT Description: RVT_N Location: 145-382 bp Feature: RT Description: RVT_N Location: 145-3 82 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 3 -1084 bp Feature: domain Description: GIIM Note: maturase Location: 1138-1369 bp Feature: domain Description: GIIM Note: maturase Location: 113 8-13 69 bp Feature: domain Description: HNHc Note: nucleases Location: 1603-1759 bp Feature: domain Description: HNHc Note: nucleases Location: 1603 -1759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFFQ01000073.1 Pseudomonas aeruginosa strain S700_C14_RS S700_C14_RS_NODE_73_length_5327, whole genome shotgun sequence (5327 bp)
Overview 1 RT 1: 62-3717 bp Neighborhood of RT #1 [62, 3717] Avd_like RVT-DGRs Feature: gene Location: 62-418 bp Feature: domain Description: Avd_like Location: 89-392 bp Feature: domain Description: Avd_like Location: 89-392 bp Feature: gene Location: 691-1800 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 868-1552 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 868-1552 bp Feature: gene Location: 2804-3169 bp Feature: gene Location: 3277-3717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: NFFQ01000079.1 Pseudomonas aeruginosa strain S700_C14_RS S700_C14_RS_NODE_79_length_2992, whole genome shotgun sequence (2992 bp)
Overview 1 RT 1: 1212-2862 bp Neighborhood of RT #1 [1212, 2918] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 1212-2918 bp Feature: RT Description: RVT_N Location: 1269-1512 bp Feature: RT Description: RVT_N Location: 1269-15 12 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1557-2193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 5 7-2193 bp Feature: domain Description: YkfC Location: 2391-2496 bp Feature: domain Description: YkfC Location: 2391-2496 bp Feature: domain Description: HNHc Note: nucleases Location: 2706-2862 bp Feature: domain Description: HNHc Note: nucleases Location: 2706-2862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)