myRT

myRT report for GCA_002135805.1_ASM213580v1

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Seq: NFFO01000011.1 Pseudomonas aeruginosa strain S742_C15_BS S742_C15_BS_NODE_11_length_167759, whole genome shotgun sequence (167759 bp)
Overview 1 RT 1: 133512-140823 bp Neighborhood of RT #1 [133512, 141878] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 133512-134651 bp Ori: OTH85336.1 Feature: domain Description: AAA_21 Location: 133584-133653 bp Feature: domain Description: AAA_21 Location: 1 33584-1 33653 bp Feature: domain Description: AAA_21 Location: 134127-134457 bp Feature: domain Description: AAA_21 Location: 1 341 27-1 34457 bp Feature: gene Location: 134651-135208 bp Feature: gene Location: 135727-138225 bp Ori: OTH85360.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 135730-136171 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 35730-1 361 71 bp Feature: gene Location: 139263-140003 bp Ori: OTH85338.1 Feature: domain Description: YeeA Location: 139278-139869 bp Feature: domain Description: YeeA Location: 1 39278-1 39869 bp Feature: gene Location: 140007-141878 bp Ori: OTH85339.1 Feature: domain Description: DUF262 Location: 140055-140823 bp Feature: domain Description: DUF262 Location: 1 40055-1 40823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: NFFO01000022.1 Pseudomonas aeruginosa strain S742_C15_BS S742_C15_BS_NODE_22_length_118562, whole genome shotgun sequence (118562 bp)
Overview 1 RT 1: 28450-33202 bp Neighborhood of RT #1 [28450, 33202] YgfZ RVT_N RVT-GII YkfC HNH SdhE Feature: gene Location: 28450-29394 bp Ori: OTH81896.1 Feature: domain Description: YgfZ Location: 28459-29359 bp Feature: domain Description: YgfZ Location: 2 8459-2 9359 bp Feature: gene Location: 30351-30628 bp Feature: gene Location: 30715-32436 bp Ori: OTH81897.1 Feature: domain Description: RVT_N Location: 30772-31009 bp Feature: domain Description: RVT_N Location: 30772 -31009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31060-31696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31060-31696 bp Feature: domain Description: YkfC Location: 31894-32050 bp Feature: domain Description: YkfC Location: 31894-32 050 bp Feature: domain Description: HNH Note: nucleases Location: 32233-32371 bp Feature: domain Description: HNH Note: nucleases Location: 32 2 33-32 371 bp Feature: gene Location: 32512-32766 bp Ori: OTH81898.1 Feature: domain Description: SdhE Location: 32518-32758 bp Feature: domain Description: SdhE Location: 32 518-32 758 bp Feature: gene Location: 32750-33202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgfZ (COG0354), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: NFFO01000086.1 Pseudomonas aeruginosa strain S742_C15_BS S742_C15_BS_NODE_86_length_2849, whole genome shotgun sequence (2849 bp)
Overview 1 RT 1: 1072-2728 bp Neighborhood of RT #1 [1072, 2757] RVT_N RVT-GII GIIM HNH Feature: gene Location: 1072-2757 bp Ori: OTH72216.1 Feature: domain Description: RVT_N Location: 1129-1369 bp Feature: domain Description: RVT_N Location: 1129-13 69 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1417-2053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1417-2053 bp Feature: domain Description: GIIM Note: maturase Location: 2107-2338 bp Feature: domain Description: GIIM Note: maturase Location: 2107-23 3 8 bp Feature: domain Description: HNH Note: nucleases Location: 2590-2728 bp Feature: domain Description: HNH Note: nucleases Location: 2590-2728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: NFFO01000046.1 Pseudomonas aeruginosa strain S742_C15_BS S742_C15_BS_NODE_46_length_56118, whole genome shotgun sequence (56118 bp)
Overview 1 RT 1: 16783-23593 bp Neighborhood of RT #1 [16783, 23790] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 16783-17610 bp Ori: OTH76628.1 Feature: domain Description: ABC_phnC Location: 16813-17527 bp Feature: domain Description: ABC_phnC Location: 16813-17527 bp Feature: gene Location: 17953-18463 bp Feature: domain Description: DUF772 Location: 18103-18298 bp Feature: domain Description: DUF772 Location: 18103-18298 bp Feature: gene Location: 18983-20251 bp Ori: OTH76629.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19196-19853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19196-19853 bp Feature: domain Description: GIIM Note: maturase Location: 19931-20153 bp Feature: domain Description: GIIM Note: maturase Location: 19931-20153 bp Feature: gene Location: 20401-20727 bp Feature: gene Location: 22246-23790 bp Ori: OTH76630.1 Feature: domain Description: CHD Location: 22462-22876 bp Feature: domain Description: CHD Location: 224 62-22876 bp Feature: domain Description: CHD Location: 23104-23593 bp Feature: domain Description: CHD Location: 23104 -23593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: NFFO01000036.1 Pseudomonas aeruginosa strain S742_C15_BS S742_C15_BS_NODE_36_length_80454, whole genome shotgun sequence (80454 bp)
Overview 1 RT 1: 50187-58357 bp Neighborhood of RT #1 [50187, 58365] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 50187-51203 bp Ori: OTH78352.1 Feature: domain Description: COG3178 Location: 50190-51189 bp Feature: domain Description: COG3178 Location: 5 0190-5 1189 bp Feature: gene Location: 52076-52288 bp Feature: gene Location: 52476-54188 bp Ori: OTH78354.1 Feature: domain Description: RVT_N Location: 52533-52776 bp Feature: domain Description: RVT_N Location: 5 25 33-5 2776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52821-53457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 2821-5 345 7 bp Feature: domain Description: YkfC Location: 53667-53817 bp Feature: domain Description: YkfC Location: 5 3667-5 3817 bp Feature: domain Description: HNH Note: nucleases Location: 53994-54132 bp Feature: domain Description: HNH Note: nucleases Location: 5 3994-5 4132 bp Feature: gene Location: 54321-57092 bp Ori: OTH78355.1 Feature: domain Description: LptD Location: 54516-57078 bp Feature: domain Description: LptD Location: 5 45 16-5 7078 bp Feature: gene Location: 57073-58365 bp Ori: OTH78356.1 Feature: domain Description: PRK10770 Location: 57163-58357 bp Feature: domain Description: PRK10770 Location: 5 7163-5 835 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)