myRT

myRT report for GCA_002135835.1_ASM213583v1

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Seq: NFFS01000070.1 Pseudomonas aeruginosa strain S668_C14_BS S668_C14_BS_NODE_70_length_2992, whole genome shotgun sequence (2992 bp)
Overview 1 RT 1: 75-1725 bp Neighborhood of RT #1 [75, 1781] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 75-1781 bp Feature: RT Description: RVT_N Location: 132-375 bp Feature: RT Description: RVT_N Location: 1 32-375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1 056 bp Feature: domain Description: YkfC Location: 1254-1359 bp Feature: domain Description: YkfC Location: 1 254-1 359 bp Feature: domain Description: HNHc Note: nucleases Location: 1569-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1 569-1 725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: NFFS01000072.1 Pseudomonas aeruginosa strain S668_C14_BS S668_C14_BS_NODE_72_length_2426, whole genome shotgun sequence (2426 bp)
Overview 1 RT 1: 621-2292 bp Neighborhood of RT #1 [621, 2339] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 621-2339 bp Feature: RT Description: RVT_N Location: 678-915 bp Feature: RT Description: RVT_N Location: 678-915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966-1617 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1902 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1902 bp Feature: domain Description: HNHc Note: nucleases Location: 2136-2292 bp Feature: domain Description: HNHc Note: nucleases Location: 2 136-2 2 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFFS01000030.1 Pseudomonas aeruginosa strain S668_C14_BS S668_C14_BS_NODE_30_length_95824, whole genome shotgun sequence (95824 bp)
Overview 1 RT 1: 49935-59586 bp Neighborhood of RT #1 [49935, 59591] DUF262 COG3472 HATPase_c_3 RVT-Retrons DUF4354 CoxL Feature: gene Location: 49935-51599 bp Feature: domain Description: DUF262 Location: 50040-50625 bp Feature: domain Description: DUF262 Location: 50040-50625 bp Feature: domain Description: COG3472 Location: 50757-51585 bp Feature: domain Description: COG3 472 Location: 50757-51585 bp Feature: gene Location: 51708-53663 bp Feature: domain Description: HATPase_c_3 Location: 51777-52125 bp Feature: domain Description: HATPase_c_3 Location: 51777-52125 bp Feature: gene Location: 53844-54797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53955-54549 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53 955-54549 bp Feature: gene Location: 56514-56894 bp Feature: domain Description: DUF4354 Location: 56517-56883 bp Feature: domain Description: DUF43 54 Location: 56517-56883 bp Feature: gene Location: 57387-59591 bp Feature: domain Description: CoxL Location: 57405-59586 bp Feature: domain Description: CoxL Location: 57405-59586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), COG3472 (Uncharacterized protein ), HATPase_c_3 (pfam13589), RVT-Retrons, DUF4354 (pfam14263), CoxL (COG1529)

Seq: NFFS01000018.1 Pseudomonas aeruginosa strain S668_C14_BS S668_C14_BS_NODE_18_length_144433, whole genome shotgun sequence (144433 bp)
Overview 1 RT 1: 132046-136310 bp Neighborhood of RT #1 [132046, 136324] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 132046-132486 bp Feature: gene Location: 132594-132959 bp Feature: gene Location: 133963-135072 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 134140-134824 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 134 14 0-134 824 bp Feature: gene Location: 135345-135701 bp Feature: domain Description: Avd_like Location: 135372-135675 bp Feature: domain Description: Avd_like Location: 135372-135675 bp Feature: gene Location: 135740-136324 bp Feature: domain Description: DUF1566 Location: 135986-136310 bp Feature: domain Description: DUF1566 Location: 135986-136310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: NFFS01000006.1 Pseudomonas aeruginosa strain S668_C14_BS S668_C14_BS_NODE_6_length_265503, whole genome shotgun sequence (265503 bp)
Overview 1 RT 1: 238839-243399 bp Neighborhood of RT #1 [238839, 243422] DUF772 RVT-GII GIIM IS5 ATPgrasp_ST ATPgrasp_Ter Feature: gene Location: 238839-239351 bp Feature: domain Description: DUF772 Location: 238989-239175 bp Feature: domain Description: DUF772 Location: 238989-239175 bp Feature: gene Location: 239387-239482 bp Feature: gene Location: 239871-241139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240084-240741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240084-240741 bp Feature: domain Description: GIIM Note: maturase Location: 240819-241041 bp Feature: domain Description: GIIM Note: maturase Location: 240819-241041 bp Feature: gene Location: 241199-241669 bp Feature: domain Description: IS5 Location: 241205-241643 bp Feature: domain Description: IS5 Location: 241205 -241643 bp Feature: gene Location: 242424-243422 bp Feature: domain Description: ATPgrasp_ST Location: 242736-242928 bp Feature: domain Description: ATPgrasp_ST Location: 242736-242928 bp Feature: domain Description: ATPgrasp_Ter Location: 243024-243399 bp Feature: domain Description: ATPgrasp_Ter Location: 243024-243399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), IS5 (COG3039), ATPgrasp_ST (pfam14397), ATPgrasp_Ter (pfam15632)