myRT

myRT report for GCA_002135885.1_ASM213588v1

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Seq: NFFV01000004.1 Pseudomonas aeruginosa strain S626_C13_RS S626_C13_RS_NODE_4_length_369831, whole genome shotgun sequence (369831 bp)
Overview 1 RT 1: 97282-105470 bp 2 RT 2: 121734-132031 bp Neighborhood of RT #1 [97282, 105478] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [121734, 132042] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 97282-98298 bp Feature: domain Description: COG3178 Location: 97285-98284 bp Feature: domain Description: COG31 78 Location: 97285-98284 bp Feature: gene Location: 99171-99383 bp Feature: gene Location: 99571-101283 bp Feature: RT Description: RVT_N Location: 99628-99871 bp Feature: RT Description: RVT_N Location: 99628-99871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99916-100552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9991 6-1 00552 bp Feature: domain Description: YkfC Location: 100759-100912 bp Feature: domain Description: YkfC Location: 1 00759-1 0091 2 bp Feature: domain Description: HNH Note: nucleases Location: 101089-101227 bp Feature: domain Description: HNH Note: nucleases Location: 1 01 089-1 01 227 bp Feature: gene Location: 101416-104205 bp Feature: domain Description: LptD Location: 101611-104191 bp Feature: domain Description: LptD Location: 1 01 61 1 -1 041 91 bp Feature: gene Location: 104186-105478 bp Feature: domain Description: PRK10770 Location: 104276-105470 bp Feature: domain Description: PRK1 0770 Location: 1 04276-1 05470 bp Feature: gene Location: 121734-123587 bp Feature: domain Description: PRK05658 Location: 121746-123585 bp Feature: domain Description: PRK05658 Location: 1 21 746-1 23585 bp Feature: gene Location: 123694-127431 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 123802-124459 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 23802-1 24459 bp Feature: domain Description: PRK09776 Location: 124672-125143 bp Feature: domain Description: PRK09776 Location: 1 24672-1 251 43 bp Feature: domain Description: PAS Location: 125200-125725 bp Feature: domain Description: PAS Location: 1 25200-1 25725 bp Feature: domain Description: PRK10060 Location: 125734-127381 bp Feature: domain Description: PRK1 0060 Location: 1 25734-1 27381 bp Feature: gene Location: 128512-130197 bp Feature: RT Description: RVT_N Location: 128569-128809 bp Feature: RT Description: RVT_N Location: 1 28569-1 28809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128857-129493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 28857-1 29493 bp Feature: domain Description: GIIM Note: maturase Location: 129547-129778 bp Feature: domain Description: GIIM Note: maturase Location: 1 29547-1 29778 bp Feature: domain Description: HNH Note: nucleases Location: 130030-130168 bp Feature: domain Description: HNH Note: nucleases Location: 1 30030-1 301 68 bp Feature: gene Location: 130525-130662 bp Feature: gene Location: 130921-132042 bp Feature: domain Description: COG3177 Location: 130939-132031 bp Feature: domain Description: COG31 77 Location: 1 30939-1 32031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )