myRT

myRT report for GCA_002135955.1_ASM213595v1

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Seq: NFFY01000046.1 Pseudomonas aeruginosa strain S611_C13_RS S611_C13_RS_NODE_46_length_36122, whole genome shotgun sequence (36122 bp)
Overview 1 RT 1: 1875-9186 bp Neighborhood of RT #1 [1875, 10241] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1875-3014 bp Ori: OTI44133.1 Feature: domain Description: AAA_21 Location: 1947-2016 bp Feature: domain Description: AAA_21 Location: 1 947-201 6 bp Feature: domain Description: AAA_21 Location: 2490-2820 bp Feature: domain Description: AAA_21 Location: 2490-2820 bp Feature: gene Location: 3014-3571 bp Feature: gene Location: 4090-6588 bp Ori: OTI44149.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4093-4534 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4093-4534 bp Feature: gene Location: 7626-8366 bp Ori: OTI44135.1 Feature: domain Description: YeeA Location: 7641-8232 bp Feature: domain Description: YeeA Location: 7641 -8232 bp Feature: gene Location: 8370-10241 bp Ori: OTI44136.1 Feature: domain Description: DUF262 Location: 8418-9186 bp Feature: domain Description: DUF262 Location: 841 8-91 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: NFFY01000079.1 Pseudomonas aeruginosa strain S611_C13_RS S611_C13_RS_NODE_79_length_2556, whole genome shotgun sequence (2556 bp)
Overview 1 RT 1: 605-2402 bp Neighborhood of RT #1 [605, 2425] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 605-2425 bp Ori: OTI38900.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872-1703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872 -1703 bp Feature: domain Description: Intron_maturas2 Location: 1784-2066 bp Feature: domain Description: Intron_maturas2 Location: 1784-2 066 bp Feature: domain Description: HNHc Note: nucleases Location: 2252-2402 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 52 -2 402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NFFY01000042.1 Pseudomonas aeruginosa strain S611_C13_RS S611_C13_RS_NODE_42_length_43990, whole genome shotgun sequence (43990 bp)
Overview 1 RT 1: 32351-39275 bp Neighborhood of RT #1 [32351, 39358] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 32351-33895 bp Ori: OTI44715.1 Feature: domain Description: CHD Location: 32567-32981 bp Feature: domain Description: CHD Location: 3 2567-3 2981 bp Feature: domain Description: CHD Location: 33209-33698 bp Feature: domain Description: CHD Location: 3 3 209-3 3 698 bp Feature: gene Location: 35414-35740 bp Feature: gene Location: 35890-37158 bp Ori: OTI44716.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36103-36760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6103 -3 6760 bp Feature: domain Description: GIIM Note: maturase Location: 36838-37060 bp Feature: domain Description: GIIM Note: maturase Location: 3 683 8-3 7060 bp Feature: gene Location: 37678-38188 bp Feature: domain Description: DUF772 Location: 37828-38023 bp Feature: domain Description: DUF772 Location: 3 7828-3 8023 bp Feature: gene Location: 38531-39358 bp Ori: OTI44717.1 Feature: domain Description: ABC_phnC Location: 38561-39275 bp Feature: domain Description: ABC_phnC Location: 3 8561-3 9275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: NFFY01000020.1 Pseudomonas aeruginosa strain S611_C13_RS S611_C13_RS_NODE_20_length_127631, whole genome shotgun sequence (127631 bp)
Overview 1 RT 1: 93081-97798 bp Neighborhood of RT #1 [93081, 97833] SdhE RVT_N RVT-GII YkfC HNH YgfZ Feature: gene Location: 93081-93533 bp Feature: gene Location: 93517-93771 bp Ori: OTI49423.1 Feature: domain Description: SdhE Location: 93523-93763 bp Feature: domain Description: SdhE Location: 93523-93763 bp Feature: gene Location: 93847-95568 bp Ori: OTI49424.1 Feature: domain Description: RVT_N Location: 93904-94141 bp Feature: domain Description: RVT_N Location: 93904 -94 14 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94192-94828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94 192-94 828 bp Feature: domain Description: YkfC Location: 95026-95182 bp Feature: domain Description: YkfC Location: 95026-95182 bp Feature: domain Description: HNH Note: nucleases Location: 95365-95503 bp Feature: domain Description: HNH Note: nucleases Location: 95365-95503 bp Feature: gene Location: 95655-95932 bp Feature: gene Location: 96889-97833 bp Ori: OTI49425.1 Feature: domain Description: YgfZ Location: 96898-97798 bp Feature: domain Description: YgfZ Location: 96898-97798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354)

Seq: NFFY01000003.1 Pseudomonas aeruginosa strain S611_C13_RS S611_C13_RS_NODE_3_length_377408, whole genome shotgun sequence (377408 bp)
Overview 1 RT 1: 292481-302786 bp 2 RT 2: 319044-327208 bp Neighborhood of RT #1 [292481, 302788] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [319044, 327222] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 292481-293602 bp Ori: OTI53220.1 Feature: domain Description: COG3177 Location: 292499-293591 bp Feature: domain Description: COG3177 Location: 292499-2935 91 bp Feature: gene Location: 293861-293997 bp Feature: gene Location: 294325-296010 bp Ori: OTI53221.1 Feature: domain Description: RVT_N Location: 294382-294622 bp Feature: domain Description: RVT_N Location: 294382-294622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294670-295306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294670-295 306 bp Feature: domain Description: GIIM Note: maturase Location: 295360-295591 bp Feature: domain Description: GIIM Note: maturase Location: 295 360-295 5 91 bp Feature: domain Description: HNH Note: nucleases Location: 295843-295981 bp Feature: domain Description: HNH Note: nucleases Location: 295 843-295 981 bp Feature: gene Location: 297091-300828 bp Ori: OTI53222.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 297199-297856 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297199-29785 6 bp Feature: domain Description: PRK09776 Location: 298069-298540 bp Feature: domain Description: PRK09776 Location: 298069-2985 40 bp Feature: domain Description: PAS Location: 298597-299122 bp Feature: domain Description: PAS Location: 2985 97-299122 bp Feature: domain Description: PRK10060 Location: 299134-300778 bp Feature: domain Description: PRK10060 Location: 299134-300778 bp Feature: gene Location: 300935-302788 bp Ori: OTI53223.1 Feature: domain Description: PRK05658 Location: 300947-302786 bp Feature: domain Description: PRK05 65 8 Location: 300947-302786 bp Feature: gene Location: 319044-320336 bp Ori: OTI53241.1 Feature: domain Description: PRK10770 Location: 319134-320328 bp Feature: domain Description: PRK10770 Location: 319134-320328 bp Feature: gene Location: 320317-323088 bp Ori: OTI53242.1 Feature: domain Description: LptD Location: 320512-323074 bp Feature: domain Description: LptD Location: 3205 12-323074 bp Feature: gene Location: 323221-324933 bp Ori: OTI53243.1 Feature: domain Description: RVT_N Location: 323278-323521 bp Feature: domain Description: RVT_N Location: 323278-3235 21 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323566-324202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3235 66-324202 bp Feature: domain Description: YkfC Location: 324412-324562 bp Feature: domain Description: YkfC Location: 324412-3245 62 bp Feature: domain Description: HNH Note: nucleases Location: 324739-324877 bp Feature: domain Description: HNH Note: nucleases Location: 324739-324877 bp Feature: gene Location: 325121-325333 bp Feature: gene Location: 326206-327222 bp Ori: OTI53244.1 Feature: domain Description: COG3178 Location: 326209-327208 bp Feature: domain Description: COG3178 Location: 326209-327208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )