myRT

myRT report for GCA_002136005.1_ASM213600v1

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Seq: NFGA01000056.1 Pseudomonas aeruginosa strain S558_C10_BS S558_C10_BS_NODE_56_length_36122, whole genome shotgun sequence (36122 bp)
Overview 1 RT 1: 25882-34054 bp Neighborhood of RT #1 [25882, 34248] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25882-27753 bp Ori: OTI58753.1 Feature: domain Description: DUF262 Location: 25930-26698 bp Feature: domain Description: DUF262 Location: 25930-26698 bp Feature: gene Location: 27757-28497 bp Ori: OTI58754.1 Feature: domain Description: YeeA Location: 27772-28363 bp Feature: domain Description: YeeA Location: 27772-28363 bp Feature: gene Location: 29535-32033 bp Ori: OTI58760.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29538-29979 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29538-29979 bp Feature: gene Location: 32552-33109 bp Feature: gene Location: 33109-34248 bp Ori: OTI58756.1 Feature: domain Description: AAA_21 Location: 33181-33250 bp Feature: domain Description: AAA_21 Location: 331 81 -33250 bp Feature: domain Description: AAA_21 Location: 33724-34054 bp Feature: domain Description: AAA_21 Location: 33724-34054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: NFGA01000052.1 Pseudomonas aeruginosa strain S558_C10_BS S558_C10_BS_NODE_52_length_43962, whole genome shotgun sequence (43962 bp)
Overview 1 RT 1: 32323-39247 bp Neighborhood of RT #1 [32323, 39330] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 32323-33867 bp Ori: OTI59662.1 Feature: domain Description: CHD Location: 32539-32953 bp Feature: domain Description: CHD Location: 32 539-32 953 bp Feature: domain Description: CHD Location: 33181-33670 bp Feature: domain Description: CHD Location: 33181-33670 bp Feature: gene Location: 35386-35712 bp Feature: gene Location: 35862-37130 bp Ori: OTI59663.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36075-36732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36075-36732 bp Feature: domain Description: GIIM Note: maturase Location: 36810-37032 bp Feature: domain Description: GIIM Note: maturase Location: 36810-37032 bp Feature: gene Location: 37650-38160 bp Feature: domain Description: DUF772 Location: 37800-37995 bp Feature: domain Description: DUF772 Location: 37800-37995 bp Feature: gene Location: 38503-39330 bp Ori: OTI59664.1 Feature: domain Description: ABC_phnC Location: 38533-39247 bp Feature: domain Description: ABC_phnC Location: 38533-392 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: NFGA01000005.1 Pseudomonas aeruginosa strain S558_C10_BS S558_C10_BS_NODE_5_length_230955, whole genome shotgun sequence (230955 bp)
Overview 1 RT 1: 50187-58357 bp 2 RT 2: 74621-84917 bp Neighborhood of RT #1 [50187, 58365] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74621, 84928] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50187-51203 bp Ori: OTI74310.1 Feature: domain Description: COG3178 Location: 50190-51189 bp Feature: domain Description: COG3 178 Location: 50190-51189 bp Feature: gene Location: 52076-52288 bp Feature: gene Location: 52476-54188 bp Feature: domain Description: RVT_N Location: 52533-52776 bp Feature: domain Description: RVT_N Location: 5253 3 -52776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52821-53457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52821-53 457 bp Feature: domain Description: YkfC Location: 53667-53817 bp Feature: domain Description: YkfC Location: 53 667-53 817 bp Feature: domain Description: HNH Note: nucleases Location: 53994-54132 bp Feature: domain Description: HNH Note: nucleases Location: 53 994-5413 2 bp Feature: gene Location: 54321-57092 bp Ori: OTI74311.1 Feature: domain Description: LptD Location: 54516-57078 bp Feature: domain Description: LptD Location: 54516-57078 bp Feature: gene Location: 57073-58365 bp Ori: OTI74312.1 Feature: domain Description: PRK10770 Location: 57163-58357 bp Feature: domain Description: PRK10770 Location: 57163 -583 57 bp Feature: gene Location: 74621-76474 bp Ori: OTI74330.1 Feature: domain Description: PRK05658 Location: 74633-76472 bp Feature: domain Description: PRK05658 Location: 7463 3 -76472 bp Feature: gene Location: 76581-80318 bp Ori: OTI74331.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76689-77346 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76689-773 46 bp Feature: domain Description: PRK09776 Location: 77559-78030 bp Feature: domain Description: PRK09776 Location: 77559-7803 0 bp Feature: domain Description: PAS Location: 78087-78612 bp Feature: domain Description: PAS Location: 78087-78612 bp Feature: domain Description: PRK10060 Location: 78624-80268 bp Feature: domain Description: PRK10060 Location: 78624-80268 bp Feature: gene Location: 81399-83084 bp Ori: OTI74332.1 Feature: domain Description: RVT_N Location: 81456-81696 bp Feature: domain Description: RVT_N Location: 81456-81696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81744-82380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81744-823 80 bp Feature: domain Description: GIIM Note: maturase Location: 82434-82665 bp Feature: domain Description: GIIM Note: maturase Location: 8243 4-82665 bp Feature: domain Description: HNH Note: nucleases Location: 82917-83055 bp Feature: domain Description: HNH Note: nucleases Location: 82917-83 055 bp Feature: gene Location: 83412-83548 bp Feature: gene Location: 83807-84928 bp Ori: OTI74333.1 Feature: domain Description: COG3177 Location: 83825-84917 bp Feature: domain Description: COG3 177 Location: 83 825-84917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: NFGA01000009.1 Pseudomonas aeruginosa strain S558_C10_BS S558_C10_BS_NODE_9_length_184547, whole genome shotgun sequence (184547 bp)
Overview 1 RT 1: 93082-97799 bp Neighborhood of RT #1 [93082, 97834] SdhE RVT_N RVT-GII YkfC HNH YgfZ Feature: gene Location: 93082-93534 bp Feature: gene Location: 93518-93772 bp Ori: OTI73370.1 Feature: domain Description: SdhE Location: 93524-93764 bp Feature: domain Description: SdhE Location: 93524 -93764 bp Feature: gene Location: 93848-95569 bp Ori: OTI73371.1 Feature: domain Description: RVT_N Location: 93905-94142 bp Feature: domain Description: RVT_N Location: 93905-94 14 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94193-94829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94 193-94 829 bp Feature: domain Description: YkfC Location: 95027-95183 bp Feature: domain Description: YkfC Location: 95027-95183 bp Feature: domain Description: HNH Note: nucleases Location: 95366-95504 bp Feature: domain Description: HNH Note: nucleases Location: 95366-95504 bp Feature: gene Location: 95656-95933 bp Feature: gene Location: 96890-97834 bp Ori: OTI73372.1 Feature: domain Description: YgfZ Location: 96899-97799 bp Feature: domain Description: YgfZ Location: 96899-97799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354)