myRT

myRT report for GCA_002136195.1_ASM213619v1

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Seq: NFGR01000066.1 Pseudomonas aeruginosa strain S137_C02_RS S137_C02_RS_NODE_66_length_2992, whole genome shotgun sequence (2992 bp)
Overview 1 RT 1: 75-1725 bp Neighborhood of RT #1 [75, 1781] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 75-1781 bp Feature: RT Description: RVT_N Location: 132-375 bp Feature: RT Description: RVT_N Location: 1 32-375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1 056 bp Feature: domain Description: YkfC Location: 1254-1359 bp Feature: domain Description: YkfC Location: 1 254-1 359 bp Feature: domain Description: HNHc Note: nucleases Location: 1569-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1 569-1 725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: NFGR01000004.1 Pseudomonas aeruginosa strain S137_C02_RS S137_C02_RS_NODE_4_length_323435, whole genome shotgun sequence (323435 bp)
Overview 1 RT 1: 162623-166901 bp Neighborhood of RT #1 [162623, 166901] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 162623-163207 bp Feature: domain Description: DUF1566 Location: 162869-163193 bp Feature: domain Description: DUF1566 Location: 162 869-163193 bp Feature: gene Location: 163246-163602 bp Feature: domain Description: Avd_like Location: 163273-163576 bp Feature: domain Description: Avd_like Location: 1632 73-163576 bp Feature: gene Location: 163875-164984 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 164052-164736 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 164052 -164736 bp Feature: gene Location: 165988-166353 bp Feature: gene Location: 166461-166901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: NFGR01000069.1 Pseudomonas aeruginosa strain S137_C02_RS S137_C02_RS_NODE_69_length_2426, whole genome shotgun sequence (2426 bp)
Overview 1 RT 1: 88-1759 bp Neighborhood of RT #1 [88, 1806] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 88-1806 bp Feature: RT Description: RVT_N Location: 145-382 bp Feature: RT Description: RVT_N Location: 145-3 82 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 3 -1084 bp Feature: domain Description: GIIM Note: maturase Location: 1138-1369 bp Feature: domain Description: GIIM Note: maturase Location: 113 8-13 69 bp Feature: domain Description: HNHc Note: nucleases Location: 1603-1759 bp Feature: domain Description: HNHc Note: nucleases Location: 1603 -1759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFGR01000007.1 Pseudomonas aeruginosa strain S137_C02_RS S137_C02_RS_NODE_7_length_278519, whole genome shotgun sequence (278519 bp)
Overview 1 RT 1: 50243-58413 bp Neighborhood of RT #1 [50243, 58421] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 50243-51259 bp Feature: domain Description: COG3178 Location: 50246-51245 bp Feature: domain Description: COG3178 Location: 5024 6-5124 5 bp Feature: gene Location: 52132-52344 bp Feature: gene Location: 52532-54244 bp Feature: RT Description: RVT_N Location: 52589-52832 bp Feature: RT Description: RVT_N Location: 52589-52832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52877-53513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52877-53513 bp Feature: domain Description: YkfC Location: 53723-53873 bp Feature: domain Description: YkfC Location: 53723-53873 bp Feature: domain Description: HNH Note: nucleases Location: 54050-54188 bp Feature: domain Description: HNH Note: nucleases Location: 54 050-54 188 bp Feature: gene Location: 54377-57148 bp Feature: domain Description: LptD Location: 54572-57134 bp Feature: domain Description: LptD Location: 54 572-57134 bp Feature: gene Location: 57129-58421 bp Feature: domain Description: PRK10770 Location: 57219-58413 bp Feature: domain Description: PRK10770 Location: 57219-584 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: NFGR01000006.1 Pseudomonas aeruginosa strain S137_C02_RS S137_C02_RS_NODE_6b_length_292640, whole genome shotgun sequence (292640 bp)
Overview 1 RT 1: 238835-243395 bp Neighborhood of RT #1 [238835, 243418] DUF772 RVT-GII GIIM IS5 ATPgrasp_ST ATPgrasp_Ter Feature: gene Location: 238835-239347 bp Feature: domain Description: DUF772 Location: 238985-239171 bp Feature: domain Description: DUF772 Location: 238985 -239171 bp Feature: gene Location: 239383-239478 bp Feature: gene Location: 239867-241135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240080-240737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240080-240737 bp Feature: domain Description: GIIM Note: maturase Location: 240815-241037 bp Feature: domain Description: GIIM Note: maturase Location: 240815 -241037 bp Feature: gene Location: 241195-241665 bp Feature: domain Description: IS5 Location: 241201-241639 bp Feature: domain Description: IS5 Location: 241201-241639 bp Feature: gene Location: 242420-243418 bp Feature: domain Description: ATPgrasp_ST Location: 242732-242924 bp Feature: domain Description: ATPgrasp_ST Location: 242732-242924 bp Feature: domain Description: ATPgrasp_Ter Location: 243020-243395 bp Feature: domain Description: ATPgrasp_Ter Location: 243020-243395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), IS5 (COG3039), ATPgrasp_ST (pfam14397), ATPgrasp_Ter (pfam15632)

Seq: NFGR01000026.1 Pseudomonas aeruginosa strain S137_C02_RS S137_C02_RS_NODE_26_length_95900, whole genome shotgun sequence (95900 bp)
Overview 1 RT 1: 49935-59586 bp Neighborhood of RT #1 [49935, 59591] DUF262 COG3472 HATPase_c_3 RVT-Retrons DUF4354 CoxL Feature: gene Location: 49935-51599 bp Feature: domain Description: DUF262 Location: 50040-50625 bp Feature: domain Description: DUF26 2 Location: 50040-506 25 bp Feature: domain Description: COG3472 Location: 50757-51585 bp Feature: domain Description: COG3472 Location: 50757-51585 bp Feature: gene Location: 51708-53663 bp Feature: domain Description: HATPase_c_3 Location: 51777-52125 bp Feature: domain Description: HATPase_c_3 Location: 51777-52125 bp Feature: gene Location: 53844-54797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53955-54549 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53955-54549 bp Feature: gene Location: 56514-56894 bp Feature: domain Description: DUF4354 Location: 56517-56883 bp Feature: domain Description: DUF4354 Location: 56 517-56 883 bp Feature: gene Location: 57387-59591 bp Feature: domain Description: CoxL Location: 57405-59586 bp Feature: domain Description: CoxL Location: 57405-59586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), COG3472 (Uncharacterized protein ), HATPase_c_3 (pfam13589), RVT-Retrons, DUF4354 (pfam14263), CoxL (COG1529)