myRT

myRT report for GCA_002136205.1_ASM213620v1

Download annotations/find similar RTs

Seq: NFGO01000013.1 Pseudomonas aeruginosa strain S247_C06_RS S247_C06_RS_NODE_13_length_192599, whole genome shotgun sequence (192599 bp)
Overview 1 RT 1: 134877-140707 bp Neighborhood of RT #1 [134877, 140712] SdhE RVT_N RVT-GII YkfC HNHc YgfZ HDOD Feature: gene Location: 134877-135329 bp Feature: gene Location: 135313-135567 bp Feature: domain Description: SdhE Location: 135319-135559 bp Feature: domain Description: SdhE Location: 1 3531 9-1 35559 bp Feature: gene Location: 135657-137363 bp Feature: RT Description: RVT_N Location: 135714-135957 bp Feature: RT Description: RVT_N Location: 1 3571 4-1 35957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136002-136638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36002-1 36638 bp Feature: domain Description: YkfC Location: 136836-136941 bp Feature: domain Description: YkfC Location: 1 36836-1 36941 bp Feature: domain Description: HNHc Note: nucleases Location: 137151-137307 bp Feature: domain Description: HNHc Note: nucleases Location: 1 371 51 -1 37307 bp Feature: gene Location: 138831-139775 bp Feature: domain Description: YgfZ Location: 138840-139740 bp Feature: domain Description: YgfZ Location: 1 38840-1 39740 bp Feature: gene Location: 139876-140712 bp Feature: domain Description: HDOD Location: 139879-140707 bp Feature: domain Description: HDOD Location: 1 39879-1 40707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), YgfZ (COG0354), HDOD (pfam08668)

Seq: NFGO01000088.1 Pseudomonas aeruginosa strain S247_C06_RS S247_C06_RS_NODE_88_length_1858, whole genome shotgun sequence (1858 bp)
Overview 1 RT 1: 36-1690 bp Neighborhood of RT #1 [36, 1788] RVT-GII GIIM Feature: gene Location: 36-131 bp Feature: gene Location: 520-1788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: domain Description: GIIM Note: maturase Location: 1468-1690 bp Feature: domain Description: GIIM Note: maturase Location: 1468-1690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NFGO01000084.1 Pseudomonas aeruginosa strain S247_C06_RS S247_C06_RS_NODE_84_length_2426, whole genome shotgun sequence (2426 bp)
Overview 1 RT 1: 621-2292 bp Neighborhood of RT #1 [621, 2339] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 621-2339 bp Feature: RT Description: RVT_N Location: 678-915 bp Feature: RT Description: RVT_N Location: 678-915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966-1617 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1902 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1902 bp Feature: domain Description: HNHc Note: nucleases Location: 2136-2292 bp Feature: domain Description: HNHc Note: nucleases Location: 213 6-2292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFGO01000027.1 Pseudomonas aeruginosa strain S247_C06_RS S247_C06_RS_NODE_27_length_95900, whole genome shotgun sequence (95900 bp)
Overview 1 RT 1: 49935-59586 bp Neighborhood of RT #1 [49935, 59591] DUF262 COG3472 HATPase_c_3 RVT-Retrons DUF4354 CoxL Feature: gene Location: 49935-51599 bp Feature: domain Description: DUF262 Location: 50040-50625 bp Feature: domain Description: DUF262 Location: 5004 0-50625 bp Feature: domain Description: COG3472 Location: 50757-51585 bp Feature: domain Description: COG34 72 Location: 50757-51585 bp Feature: gene Location: 51708-53663 bp Feature: domain Description: HATPase_c_3 Location: 51777-52125 bp Feature: domain Description: HATPase_c_3 Location: 51777-52125 bp Feature: gene Location: 53844-54797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53955-54549 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53955-54 54 9 bp Feature: gene Location: 56514-56894 bp Feature: domain Description: DUF4354 Location: 56517-56883 bp Feature: domain Description: DUF4 354 Location: 56517-56883 bp Feature: gene Location: 57387-59591 bp Feature: domain Description: CoxL Location: 57405-59586 bp Feature: domain Description: CoxL Location: 574 05-59586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), COG3472 (Uncharacterized protein ), HATPase_c_3 (pfam13589), RVT-Retrons, DUF4354 (pfam14263), CoxL (COG1529)

Seq: NFGO01000006.1 Pseudomonas aeruginosa strain S247_C06_RS S247_C06_RS_NODE_6_length_278529, whole genome shotgun sequence (278529 bp)
Overview 1 RT 1: 50243-58413 bp Neighborhood of RT #1 [50243, 58421] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 50243-51259 bp Feature: domain Description: COG3178 Location: 50246-51245 bp Feature: domain Description: COG3178 Location: 5 0246-5 1245 bp Feature: gene Location: 52132-52344 bp Feature: gene Location: 52532-54244 bp Feature: RT Description: RVT_N Location: 52589-52832 bp Feature: RT Description: RVT_N Location: 5 25 89-5 2832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52877-53513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 2877-5 35 13 bp Feature: domain Description: YkfC Location: 53723-53873 bp Feature: domain Description: YkfC Location: 5 3723-5 3873 bp Feature: domain Description: HNH Note: nucleases Location: 54050-54188 bp Feature: domain Description: HNH Note: nucleases Location: 5 405 0-5 4188 bp Feature: gene Location: 54377-57148 bp Feature: domain Description: LptD Location: 54572-57134 bp Feature: domain Description: LptD Location: 5 45 72-5 7134 bp Feature: gene Location: 57129-58421 bp Feature: domain Description: PRK10770 Location: 57219-58413 bp Feature: domain Description: PRK10770 Location: 5 7219-5 8413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: NFGO01000005.1 Pseudomonas aeruginosa strain S247_C06_RS S247_C06_RS_NODE_5_length_301397, whole genome shotgun sequence (301397 bp)
Overview 1 RT 1: 165009-169287 bp Neighborhood of RT #1 [165009, 169287] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 165009-165593 bp Feature: domain Description: DUF1566 Location: 165255-165579 bp Feature: domain Description: DUF156 6 Location: 16 5255-16 5579 bp Feature: gene Location: 165632-165988 bp Feature: domain Description: Avd_like Location: 165659-165962 bp Feature: domain Description: Avd_like Location: 16 56 59-16 596 2 bp Feature: gene Location: 166261-167370 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 166438-167122 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16 6 438-16 7122 bp Feature: gene Location: 168374-168739 bp Feature: gene Location: 168847-169287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs