myRT

myRT report for GCA_002136275.1_ASM213627v1

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Seq: NFGT01000043.1 Pseudomonas aeruginosa strain S61_C01_BS S61_C01_BS_NODE_43_length_43941, whole genome shotgun sequence (43941 bp)
Overview 1 RT 1: 4583-11393 bp Neighborhood of RT #1 [4583, 11590] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4583-5410 bp Ori: OTJ84397.1 Feature: domain Description: ABC_phnC Location: 4613-5327 bp Feature: domain Description: ABC_phnC Location: 461 3-5327 bp Feature: gene Location: 5753-6263 bp Feature: domain Description: DUF772 Location: 5903-6098 bp Feature: domain Description: DUF772 Location: 5903-6098 bp Feature: gene Location: 6783-8051 bp Ori: OTJ84398.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6996-7653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6996-7653 bp Feature: domain Description: GIIM Note: maturase Location: 7731-7953 bp Feature: domain Description: GIIM Note: maturase Location: 7731 -7953 bp Feature: gene Location: 8201-8527 bp Feature: gene Location: 10046-11590 bp Ori: OTJ84399.1 Feature: domain Description: CHD Location: 10262-10676 bp Feature: domain Description: CHD Location: 1 0262-1 0676 bp Feature: domain Description: CHD Location: 10904-11393 bp Feature: domain Description: CHD Location: 1 0904-1 1 393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: NFGT01000053.1 Pseudomonas aeruginosa strain S61_C01_BS S61_C01_BS_NODE_53_length_14693, whole genome shotgun sequence (14693 bp)
Overview 1 RT 1: 4503-12675 bp Neighborhood of RT #1 [4503, 12869] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 4503-6374 bp Ori: OTJ82073.1 Feature: domain Description: DUF262 Location: 4551-5319 bp Feature: domain Description: DUF2 62 Location: 4551-5319 bp Feature: gene Location: 6378-7118 bp Ori: OTJ82074.1 Feature: domain Description: YeeA Location: 6393-6984 bp Feature: domain Description: YeeA Location: 6393-6984 bp Feature: gene Location: 8156-10654 bp Ori: OTJ82078.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 8159-8600 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 8159-8600 bp Feature: gene Location: 11173-11730 bp Feature: gene Location: 11730-12869 bp Ori: OTJ82076.1 Feature: domain Description: AAA_21 Location: 11802-11871 bp Feature: domain Description: AAA_2 1 Location: 11802 -11871 bp Feature: domain Description: AAA_21 Location: 12345-12675 bp Feature: domain Description: AAA_2 1 Location: 12 345-12 675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: NFGT01000013.1 Pseudomonas aeruginosa strain S61_C01_BS S61_C01_BS_NODE_13_length_184557, whole genome shotgun sequence (184557 bp)
Overview 1 RT 1: 93142-97859 bp Neighborhood of RT #1 [93142, 97894] SdhE RVT_N RVT-GII YkfC HNH YgfZ Feature: gene Location: 93142-93594 bp Feature: gene Location: 93578-93832 bp Ori: OTJ91763.1 Feature: domain Description: SdhE Location: 93584-93824 bp Feature: domain Description: SdhE Location: 93 584-93 824 bp Feature: gene Location: 93908-95629 bp Ori: OTJ91764.1 Feature: domain Description: RVT_N Location: 93965-94202 bp Feature: domain Description: RVT_N Location: 93 965-94202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94253-94889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94253 -94889 bp Feature: domain Description: YkfC Location: 95087-95243 bp Feature: domain Description: YkfC Location: 95087-95243 bp Feature: domain Description: HNH Note: nucleases Location: 95426-95564 bp Feature: domain Description: HNH Note: nucleases Location: 95426-95564 bp Feature: gene Location: 95716-95993 bp Feature: gene Location: 96950-97894 bp Ori: OTJ91765.1 Feature: domain Description: YgfZ Location: 96959-97859 bp Feature: domain Description: YgfZ Location: 96959-97859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354)

Seq: NFGT01000006.1 Pseudomonas aeruginosa strain S61_C01_BS S61_C01_BS_NODE_6_length_282125, whole genome shotgun sequence (282125 bp)
Overview 1 RT 1: 50137-58307 bp 2 RT 2: 74571-84867 bp Neighborhood of RT #1 [50137, 58315] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74571, 84878] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50137-51153 bp Ori: OTJ93279.1 Feature: domain Description: COG3178 Location: 50140-51139 bp Feature: domain Description: COG3178 Location: 5014 0-51139 bp Feature: gene Location: 52026-52238 bp Feature: gene Location: 52426-54138 bp Ori: OTJ93281.1 Feature: domain Description: RVT_N Location: 52483-52726 bp Feature: domain Description: RVT_N Location: 524 83-52726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52771-53407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52771-534 07 bp Feature: domain Description: YkfC Location: 53617-53767 bp Feature: domain Description: YkfC Location: 53617-53767 bp Feature: domain Description: HNH Note: nucleases Location: 53944-54082 bp Feature: domain Description: HNH Note: nucleases Location: 5394 4 -54 082 bp Feature: gene Location: 54271-57042 bp Ori: OTJ93282.1 Feature: domain Description: LptD Location: 54466-57028 bp Feature: domain Description: LptD Location: 54 4 66-57028 bp Feature: gene Location: 57023-58315 bp Ori: OTJ93283.1 Feature: domain Description: PRK10770 Location: 57113-58307 bp Feature: domain Description: PRK10770 Location: 57113-58307 bp Feature: gene Location: 74571-76424 bp Ori: OTJ93301.1 Feature: domain Description: PRK05658 Location: 74583-76422 bp Feature: domain Description: PRK05658 Location: 74 583-764 22 bp Feature: gene Location: 76531-80268 bp Ori: OTJ93302.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76639-77296 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76639-77296 bp Feature: domain Description: PRK09776 Location: 77509-77980 bp Feature: domain Description: PRK09776 Location: 77509-77980 bp Feature: domain Description: PAS Location: 78037-78562 bp Feature: domain Description: PAS Location: 78037-78562 bp Feature: domain Description: PRK10060 Location: 78574-80218 bp Feature: domain Description: PRK10060 Location: 78574 -80218 bp Feature: gene Location: 81349-83034 bp Ori: OTJ93303.1 Feature: domain Description: RVT_N Location: 81406-81646 bp Feature: domain Description: RVT_N Location: 814 06-8164 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81694-82330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81694 -82330 bp Feature: domain Description: GIIM Note: maturase Location: 82384-82615 bp Feature: domain Description: GIIM Note: maturase Location: 82384 -82615 bp Feature: domain Description: HNH Note: nucleases Location: 82867-83005 bp Feature: domain Description: HNH Note: nucleases Location: 82867-83005 bp Feature: gene Location: 83362-83498 bp Feature: gene Location: 83757-84878 bp Ori: OTJ93304.1 Feature: domain Description: COG3177 Location: 83775-84867 bp Feature: domain Description: COG3177 Location: 83775-84 867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )