myRT

myRT report for GCA_002136295.1_ASM213629v1

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Seq: NFGV01000129.1 Pseudomonas aeruginosa strain S53_C01_BS S53_C01_BS_NODE_129_length_612, whole genome shotgun sequence (612 bp)
Overview 1 RT 1: 40-613 bp Neighborhood of RT #1 [40, 612] RVT-GII Feature: gene Location: 40-612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88-613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88-61 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NFGV01000009.1 Pseudomonas aeruginosa strain S53_C01_BS S53_C01_BS_NODE_9_length_211530, whole genome shotgun sequence (211530 bp)
Overview 1 RT 1: 114243-124551 bp 2 RT 2: 140810-149003 bp Neighborhood of RT #1 [114243, 124553] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [140810, 149017] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 114243-115364 bp Feature: domain Description: COG3177 Location: 114261-115353 bp Feature: domain Description: COG3177 Location: 1142 61-115353 bp Feature: gene Location: 115626-115787 bp Feature: gene Location: 116090-117775 bp Feature: RT Description: RVT_N Location: 116147-116387 bp Feature: RT Description: RVT_N Location: 116147-116387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116435-117071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116435-117071 bp Feature: domain Description: GIIM Note: maturase Location: 117125-117356 bp Feature: domain Description: GIIM Note: maturase Location: 11712 5-117356 bp Feature: domain Description: HNH Note: nucleases Location: 117608-117746 bp Feature: domain Description: HNH Note: nucleases Location: 117608-117746 bp Feature: gene Location: 118856-122593 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 118964-119621 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 118964-11962 1 bp Feature: domain Description: PRK09776 Location: 119834-120305 bp Feature: domain Description: PRK09776 Location: 119834-12 0305 bp Feature: domain Description: PAS Location: 120362-120887 bp Feature: domain Description: PAS Location: 12 0362 -12 0887 bp Feature: domain Description: PRK10060 Location: 120896-122543 bp Feature: domain Description: PRK10060 Location: 12 0896-12 2 543 bp Feature: gene Location: 122700-124553 bp Feature: domain Description: PRK05658 Location: 122712-124551 bp Feature: domain Description: PRK05658 Location: 12 2 712 -12 4551 bp Feature: gene Location: 140810-142102 bp Feature: domain Description: PRK10770 Location: 140900-142094 bp Feature: domain Description: PRK10770 Location: 140900-142 094 bp Feature: gene Location: 142083-144884 bp Feature: domain Description: LptD Location: 142278-144870 bp Feature: domain Description: LptD Location: 142 2 78-144870 bp Feature: gene Location: 145017-146729 bp Feature: RT Description: RVT_N Location: 145074-145317 bp Feature: RT Description: RVT_N Location: 145074-145317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145362-145995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145362 -145995 bp Feature: domain Description: YkfC Location: 146208-146358 bp Feature: domain Description: YkfC Location: 1462 08-146358 bp Feature: domain Description: HNH Note: nucleases Location: 146535-146673 bp Feature: domain Description: HNH Note: nucleases Location: 146535-146673 bp Feature: gene Location: 146916-147128 bp Feature: gene Location: 148001-149017 bp Feature: domain Description: COG3178 Location: 148004-149003 bp Feature: domain Description: COG3178 Location: 148004-149003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )