myRT

myRT report for GCA_002136335.1_ASM213633v1

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Seq: NFFC01000085.1 Pseudomonas aeruginosa strain S854_C18_BS S854_C18_BS_NODE_85_length_2418, whole genome shotgun sequence (2418 bp)
Overview 1 RT 1: 618-2289 bp Neighborhood of RT #1 [618, 2336] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 618-2336 bp Feature: RT Description: RVT_N Location: 675-912 bp Feature: RT Description: RVT_N Location: 675-91 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1 61 4 bp Feature: domain Description: GIIM Note: maturase Location: 1668-1899 bp Feature: domain Description: GIIM Note: maturase Location: 1 668-1 899 bp Feature: domain Description: HNHc Note: nucleases Location: 2133-2289 bp Feature: domain Description: HNHc Note: nucleases Location: 21 33-2289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFFC01000007.1 Pseudomonas aeruginosa strain S854_C18_BS S854_C18_BS_NODE_7_length_222771, whole genome shotgun sequence (222771 bp)
Overview 1 RT 1: 137806-148112 bp 2 RT 2: 164371-172564 bp Neighborhood of RT #1 [137806, 148114] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [164371, 172578] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 137806-138927 bp Feature: domain Description: COG3177 Location: 137824-138916 bp Feature: domain Description: COG3177 Location: 13782 4-138916 bp Feature: gene Location: 139186-139322 bp Feature: gene Location: 139651-141336 bp Feature: RT Description: RVT_N Location: 139708-139948 bp Feature: RT Description: RVT_N Location: 139708-139948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139996-140632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139996-140632 bp Feature: domain Description: GIIM Note: maturase Location: 140686-140917 bp Feature: domain Description: GIIM Note: maturase Location: 140686-140917 bp Feature: domain Description: HNH Note: nucleases Location: 141169-141307 bp Feature: domain Description: HNH Note: nucleases Location: 141169-141307 bp Feature: gene Location: 142417-146154 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 142525-143182 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 142 52 5-143182 bp Feature: domain Description: PRK09776 Location: 143395-143866 bp Feature: domain Description: PRK09776 Location: 143395-143866 bp Feature: domain Description: PAS Location: 143926-144448 bp Feature: domain Description: PAS Location: 14392 6-144448 bp Feature: domain Description: PRK10060 Location: 144457-146104 bp Feature: domain Description: PRK10060 Location: 144457-146104 bp Feature: gene Location: 146261-148114 bp Feature: domain Description: PRK05658 Location: 146273-148112 bp Feature: domain Description: PRK05658 Location: 1462 73-148112 bp Feature: gene Location: 164371-165663 bp Feature: domain Description: PRK10770 Location: 164461-165655 bp Feature: domain Description: PRK10770 Location: 164461-165655 bp Feature: gene Location: 165644-168445 bp Feature: domain Description: LptD Location: 165839-168431 bp Feature: domain Description: LptD Location: 165839-168431 bp Feature: gene Location: 168578-170290 bp Feature: RT Description: RVT_N Location: 168635-168878 bp Feature: RT Description: RVT_N Location: 168635-168878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168923-169556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16892 3-169556 bp Feature: domain Description: YkfC Location: 169769-169919 bp Feature: domain Description: YkfC Location: 169769-169919 bp Feature: domain Description: HNH Note: nucleases Location: 170096-170234 bp Feature: domain Description: HNH Note: nucleases Location: 170096-1702 34 bp Feature: gene Location: 170477-170689 bp Feature: gene Location: 171562-172578 bp Feature: domain Description: COG3178 Location: 171565-172564 bp Feature: domain Description: COG3178 Location: 171565-172 564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )