myRT

myRT report for GCA_002136375.1_ASM213637v1

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Seq: NFFK01000067.1 Pseudomonas aeruginosa strain S787_C16_RS S787_C16_RS_NODE_67_length_2426, whole genome shotgun sequence (2426 bp)
Overview 1 RT 1: 621-2292 bp Neighborhood of RT #1 [621, 2339] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 621-2339 bp Feature: RT Description: RVT_N Location: 678-915 bp Feature: RT Description: RVT_N Location: 678-91 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966-1 61 7 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1902 bp Feature: domain Description: GIIM Note: maturase Location: 1 671 -1 902 bp Feature: domain Description: HNHc Note: nucleases Location: 2136-2292 bp Feature: domain Description: HNHc Note: nucleases Location: 21 36-2292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NFFK01000021.1 Pseudomonas aeruginosa strain S787_C16_RS S787_C16_RS_NODE_21_length_140185, whole genome shotgun sequence (140185 bp)
Overview 1 RT 1: 70528-75088 bp Neighborhood of RT #1 [70528, 75111] DUF772 RVT-GII GIIM IS5 ATPgrasp_ST ATPgrasp_Ter Feature: gene Location: 70528-71040 bp Feature: domain Description: DUF772 Location: 70678-70864 bp Feature: domain Description: DUF772 Location: 70678-70864 bp Feature: gene Location: 71076-71171 bp Feature: gene Location: 71560-72828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71773-72430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71773-72 430 bp Feature: domain Description: GIIM Note: maturase Location: 72508-72730 bp Feature: domain Description: GIIM Note: maturase Location: 72 508-72 730 bp Feature: gene Location: 72888-73358 bp Feature: domain Description: IS5 Location: 72894-73332 bp Feature: domain Description: IS5 Location: 72 894-73332 bp Feature: gene Location: 74113-75111 bp Feature: domain Description: ATPgrasp_ST Location: 74425-74617 bp Feature: domain Description: ATPgrasp_ST Location: 7442 5-74617 bp Feature: domain Description: ATPgrasp_Ter Location: 74713-75088 bp Feature: domain Description: ATPgrasp_Ter Location: 74713-75088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), IS5 (COG3039), ATPgrasp_ST (pfam14397), ATPgrasp_Ter (pfam15632)

Seq: NFFK01000027.1 Pseudomonas aeruginosa strain S787_C16_RS S787_C16_RS_NODE_27_length_95800, whole genome shotgun sequence (95800 bp)
Overview 1 RT 1: 36260-45902 bp Neighborhood of RT #1 [36260, 45916] CoxL DUF4354 RVT-Retrons HATPase_c_3 DUF262 COG3472 Feature: gene Location: 36260-38464 bp Feature: domain Description: CoxL Location: 36278-38459 bp Feature: domain Description: CoxL Location: 3 6278-3 8459 bp Feature: gene Location: 38957-39337 bp Feature: domain Description: DUF4354 Location: 38960-39326 bp Feature: domain Description: DUF43 54 Location: 3 8960-3 93 26 bp Feature: gene Location: 41054-42007 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41165-41759 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41165-41759 bp Feature: gene Location: 42188-44143 bp Feature: domain Description: HATPase_c_3 Location: 42257-42605 bp Feature: domain Description: HATPase_c_3 Location: 42257-42605 bp Feature: gene Location: 44252-45916 bp Feature: domain Description: DUF262 Location: 44357-44942 bp Feature: domain Description: DUF262 Location: 443 57-44942 bp Feature: domain Description: COG3472 Location: 45074-45902 bp Feature: domain Description: COG3 472 Location: 45074-45902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CoxL (COG1529), DUF4354 (pfam14263), RVT-Retrons, HATPase_c_3 (pfam13589), DUF262 (pfam03235), COG3472 (Uncharacterized protein )

Seq: NFFK01000019.1 Pseudomonas aeruginosa strain S787_C16_RS S787_C16_RS_NODE_19a_length_144459, whole genome shotgun sequence (144459 bp)
Overview 1 RT 1: 132071-136335 bp Neighborhood of RT #1 [132071, 136349] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 132071-132511 bp Feature: gene Location: 132619-132984 bp Feature: gene Location: 133988-135097 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 134165-134849 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 134 165-134 84 9 bp Feature: gene Location: 135370-135726 bp Feature: domain Description: Avd_like Location: 135397-135700 bp Feature: domain Description: Avd_like Location: 135397-135700 bp Feature: gene Location: 135765-136349 bp Feature: domain Description: DUF1566 Location: 136011-136335 bp Feature: domain Description: DUF1566 Location: 136011-136335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: NFFK01000012.1 Pseudomonas aeruginosa strain S787_C16_RS S787_C16_RS_NODE_12_length_192514, whole genome shotgun sequence (192514 bp)
Overview 1 RT 1: 134842-140672 bp Neighborhood of RT #1 [134842, 140677] SdhE RVT_N RVT-GII YkfC HNHc YgfZ HDOD Feature: gene Location: 134842-135294 bp Feature: gene Location: 135278-135532 bp Feature: domain Description: SdhE Location: 135284-135524 bp Feature: domain Description: SdhE Location: 135 284-135 5 24 bp Feature: gene Location: 135622-137328 bp Feature: RT Description: RVT_N Location: 135679-135922 bp Feature: RT Description: RVT_N Location: 135 679-135 922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135967-136603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135 967-136603 bp Feature: domain Description: YkfC Location: 136801-136906 bp Feature: domain Description: YkfC Location: 136801-136906 bp Feature: domain Description: HNHc Note: nucleases Location: 137116-137272 bp Feature: domain Description: HNHc Note: nucleases Location: 137116-137272 bp Feature: gene Location: 138796-139740 bp Feature: domain Description: YgfZ Location: 138805-139705 bp Feature: domain Description: YgfZ Location: 138805 -139705 bp Feature: gene Location: 139841-140677 bp Feature: domain Description: HDOD Location: 139844-140672 bp Feature: domain Description: HDOD Location: 139844-140672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), YgfZ (COG0354), HDOD (pfam08668)